BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59340.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898892 jgi|Araly1|898892|Al_scaffold_0005_2858 1581 0.0
Ahg923178 jgi|Araly1|923178|scaffold_104459.1 156 5e-37
> Ahg898892 jgi|Araly1|898892|Al_scaffold_0005_2858
Length=1041
Score = 1581 bits (856), Expect = 0.0
Identities = 983/1044 (94%), Gaps = 10/1044 (1%)
Strand=Plus/Plus
Query 117 ATGGCAATGGGTTTCGATTTCAATGAGATGAACAAAACAAAGAAGACTTTAATTGGACTT 176
|||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 1 ATGGCAATGGGTTTTGATTTCAATGAGATGAATAAAACGAAGAAAACTTTGATTGGACTT 60
Query 177 GGCTTGGGACAGATCCTCTCACTTCTATGTACTTCTAATGCCTTCACATCCTCTGAGCTC 236
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GGCTTAGGACAAATCCTCTCACTTCTATGTACTTCTATTGCCTTCACATCCTCTGAGCTC 120
Query 237 GCCAGAAAAGGAATAAATGCTCCAACGTCACAAACGTTCCTCAGTTATACATTACTGGCA 296
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 GCCAGAAAAGGAATAAATGCTCCAACATCACAAACCTTCCTCAGTTATACATTACTGGCA 180
Query 297 GTCGTCTATGGAGGTATCATGCTCTATCGGAGACCAACAATTAAGGGGAAGTGGTATCAC 356
|||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTCGTCTATGGAGGTATCGTGATGTATCGAAGACCAACAATTAAGGGGAAGTGGTATCAC 240
Query 357 TATTTCCTCCTTGCTTTAGTTGACGTGGAAGGCAATTTTCTTGTGGTGAAGGCGAATCAG 416
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACTTCCTCCTTGCCTTAGTTGACGTGGAAGGCAATTTTCTTGTGGTGAAGGCGAATCAG 300
Query 417 TACACATCGATTACGAGTATCATGCTACTTGATTGCTGGGCGATCCCTTGTGTGTTGGTC 476
||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 301 TACACATCGATAACGAGTATCATGCTACTGGATTGCTGGGCGATCCCTTGCGTTTTGGTC 360
Query 477 TTAACTTGGATGTTCCTGAAAACAAAATACAGATTAATGAAGATCAGTGGTGTATTTATC 536
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 TTGACTTGGATTTTCCTGAAAACAAAATACAGATTGATGAAGATCAGTGGTGTGTTTATC 420
Query 537 TGTATTGCTGGTGTTGTCATGGTACTCTTCTCTGACGTTCACGCAGGAAGTCGAGCAGGT 596
|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 421 TGTATTGCTGGTGTTGTCATGGTAGTCTTCTCAGACGTTCACGCAGGAAGTAGAGCAGGA 480
Query 597 GGAAGTAATCCTGTTAAAGGAGATTTTCTTGTTCTAGCTGGAGCAACTTTATATGCTGTC 656
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 481 GGAAGTAATCCTGTTAAAGGAGATTTTCTAGTTTTAGCTGGAGCAACTTTATATGCTGTC 540
Query 657 AGTAATACCACCGAGGAGTTTCTTGTGAAGAATGCAGACACAGTTGAGTTGATGACCTTC 716
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 541 AGTAATACCACCGAGGAGTTCCTTGTGAAGAATGCAGGCACAGTTGAGTTGATGACCTTC 600
Query 717 ATGGGACTTTTTGGAGCCATTATTAGTGCCATTCAGGTAGCCATATTCGAACAAGGTGAG 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 ATGGGACTTTTTGGAGCCATTATTAGTGCCATTCAGGTAGCCATATTTGAACAAGGTGAG 660
Query 777 CTCAAAGCTATTCACTGGTCAGCTGATGCAGTTTTCCCTTTCCTTAGATTCGCAATCACG 836
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CTCAAAGCTATTCTCTGGTCAGCTGATGCCGTTTTCCCTTTCCTTAGATTCGCAATCACG 720
Query 837 ATGTTCCTCTTCTATTCACTACTACCGATTTTACTGAGGACTAATGGTTCAACAATGTTC 896
||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 721 ATGTTTCTCTTCTACTCACTACTACCGGTTTTACTGAGGACCAATGGTTCAACAATGTTC 780
Query 897 ACCCTCTCATTGCTGACATCAGACATGTGGGCGGTTTTGATCCGCATTTTCGCATACCAC 956
| |||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 781 AACCTCTCGTTGCTCACATCAGACATGTGGGCTGTTTTGACCCGCATTTTCGCATACCAC 840
Query 957 GAGAAGGTTGATTGGCTCTACTACTTGGCATTTGCTACAACAGCTATTGGACTAATCATA 1016
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GAGAAGGTGGATTGGCTCTATTACTTGGCATTTGCTACAACAGCTATTGGACTGATCATA 900
Query 1017 TACTCAATgaaggagaaagatgaggaagaagaaagagaggagcagaggaagaaactgttg 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TACTCAATGAAGGAGAAAGATGAGGAAGAAGAAAGAGAGGAGCAGAGGAAGAAGCTGTTG 960
Query 1077 gatgag---gagga---aggTCAATCACTTCCAGACA-CATCGTTATAGTTGCTTCCACC 1129
|||||| ||||| |||| || |||||||||||| | | |||||||||||||||||
Sbjct 961 GATGAGATTGAGGAGGCAGGTGAAACACTTCCAGACAGC--C-TTATAGTTGCTTCCACC 1017
Query 1130 GGAACCCTAACCAAAGGGATATGA 1153
|||||||||||||||||| |||||
Sbjct 1018 GGAACCCTAACCAAAGGGCTATGA 1041
> Ahg923178 jgi|Araly1|923178|scaffold_104459.1
Length=201
Score = 156 bits (84), Expect = 5e-37
Identities = 129/150 (86%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 96 ATCTCAGCTTCTTCTGCAATAATGGCAATGGGTTTCGATTTCAATGAGATGAACAAAACA 155
|||||| | |||||||| ||||| ||||| |||| ||||||||||||| || || ||
Sbjct 3 ATCTCAACATCTTCTGC---AATGGTAATGGTTTTCAATTTCAATGAGATAAATAAGACG 59
Query 156 AAGAAGACTTTAATTGGACTTGGCTTGGGACAGATCCTCTCACTTCTATGTACTTCTAA- 214
|||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 60 AAGAAGAC-TTCATTGGACTTGGCTTGGGACAGATCCTCTCACTTCTATGTACGAATTAG 118
Query 215 TGCCTTCACATCCTCTGAGCTCGCCAGAAA 244
|||||| ||||||||| |||||||||||||
Sbjct 119 TGCCTTTACATCCTCTAAGCTCGCCAGAAA 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5