BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59350.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1 2724 0.0
Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1 1092 0.0
> Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1
Length=1762
Score = 2724 bits (1475), Expect = 0.0
Identities = 1691/1789 (95%), Gaps = 39/1789 (2%)
Strand=Plus/Plus
Query 4 CTAAATTTGGGATAAAAATTGTCTATTCTTGATCA-TTCCtctctgtatctctctgcttt 62
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTAAATTTGGGATAAAAA-TGTCTATTCTTGATCATTTCCTCTCTGTATCTCTCTGCTTT 59
Query 63 tgacaccttctcttagctgttttttcatcttttatctctgtttttaaaatcttttggctc 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 60 TGACACCTTCTCTTAGCTG--TTTTCATCTTTTATCTCTGTTTTTAAAATCTTTTGCCTC 117
Query 123 tttCGAAGGGTTTCGAGTCCTTTTGAGTTCTTTGGGCTTCCTCCCAAATTTCTCCACGAG 182
|||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 118 TTTCAAAGGGTTTCGAGTTGTTTTGAGTTCTTTGGG-TT--TCCCAAATTTCTCCACGAG 174
Query 183 CTCGACCCCTTTCGTATCTTCCTTCTCA-tttttttGCCAAATTTATTCGATCCGTCTTT 241
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 175 CTCGACCCCTTTCGTATCTTCCTTCTCATTTTTTTTGCCAAATTCATTCGATCCGTCTTT 234
Query 242 CACTATGTATCCGATGGATTCTGATTACCATCGCCGTGGTCTGGTGGCAAACGATCGTTC 301
|||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 235 CACTATGTATCCGATGGATTCTGACTATCATCGTCGTGGTCTGGTGGCGAACGATCGTTC 294
Query 302 ACCAGCTCAGTTTGTTAGGCTGGATAAACCGAGAGCCGTAGACGATCTCTATATAGGCAA 361
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACCAGCTCACTTTGTTAGACTGGATAAACCGAGAGCCGTAGACGATCTCTATATAGGCAA 354
Query 362 GAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTACCATTC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTACCATTC 414
Query 422 TTCTGAAAATGAACACCTCAGAAGCCCTAAGCACCACAATGATTTTGGGCATCACACTAG 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTCTGAAAATGAACACCTGAGAAGCCCTAAGCACCACAATGATTTTGGGCATCACACTAG 474
Query 482 AAAACCACAGGCGGCTGTGAAGCCTGATGCTTTGAAGGAGCCTCCATCTATTGATGTGCC 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAAACCACAGGCAGCTGTGAAGCCTGATGCTTTGAAGGAGCCTCCATCTATTGATGTGCC 534
Query 542 TGCATTGTCATTGGATGAGTTGAAAGAAAAGACCGATAACTTTGGATCAAAGTCATTGAT 601
||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||
Sbjct 535 TGCATTGTCATTGGATGAGCTGAAAGAAAAGACTGATAATTTTGGATCAAAGGCATTGAT 594
Query 602 TGGTGAAGGATCTTACGGCAGAGCCTATTATGCAACCTTGAAAGATGG-AAAGGCTGTCG 660
|||||||||||||||||| |||||||| ||||||||||||||||| || |||| |||| |
Sbjct 595 TGGTGAAGGATCTTACGGAAGAGCCTACTATGCAACCTTGAAAGAAGGGAAAG-CTGTGG 653
Query 661 CGGTGAAGAAGCTTGACAATGCAGCGGAACCTGAATCAAATGTTGAGTTCTTGACTCAGG 720
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 654 CGGTGAAGAAGCTTGATAATTCAGCTGAACCTGAATCAAATGTTGAGTTCTTGACTCAGG 713
Query 721 TCTCTAGGGTTTCCAAGCTGAAGCACGATAATTTTGTTGAGCTCTTCGGTTATTGTGTTG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCTCGAGGGTTTCCAAGCTGAAGCACGATAATTTTGTTGAGCTCTTCGGTTATTGTGTTG 773
Query 781 AAGGGAATTTCCGCATTCTTGCGTATGAGTTTGCTACTATGGGATCTTTACATGACATCT 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 774 AAGGGAATTTCCGCATTCTTGCGTATGAGTTTGCCACTATGGGATCTTTACATGACATCT 833
Query 841 TACACGGGAGGAAAGGAGTCCAAGGAGCACAACCAGGTCCTACGCTTGACTGGATCCAAC 900
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 834 TACACGGGAGGAAAGGAGTCCAAGGAGCACAACCAGGTCCGACACTTGATTGGATCCAAC 893
Query 901 GGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTTGAGTATTTGCATGAGAAAGTTCAAC 960
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 894 GGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTCGAGTATTTACATGAGAAAGTTCAAC 953
Query 961 CTGCAGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTTGAAGATTTTAAAG 1020
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 CTGCGGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTTGAAGACTTTAAAG 1013
Query 1021 CCAAGATCGCTGATTTTAATCTATCGAACCAATCTCCTGATATGGCTGCTCGTCTTCATT 1080
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1014 CCAAGATCGCTGATTTTAATCTATCGAATCAATCTCCTGATATGGCTGCTCGTCTTCATT 1073
Query 1081 CTACCAGAGTTTTGGGAACCTTCGGTTACCACGCACCAGAGTATGCGATGACTGGTCAAC 1140
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1074 CTACCAGAGTTTTGGGAACCTTCGGTTACCATGCACCAGAGTATGCTATGACTGGTCAAC 1133
Query 1141 TGACACAGAAGAGTGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCTCTTGACTGGTA 1200
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1134 TGACACAGAAGAGTGATGTTTATAGTTTTGGTGTCGTGCTATTGGAGCTCTTGACTGGTA 1193
Query 1201 GGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGGCTACTC 1260
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1194 GGAAACCCGTTGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTCACTTGGGCTACTC 1253
Query 1261 CAAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACT-AAAGGGAGAATAT 1319
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1254 CGAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACTGAAAGG-AGAATAT 1312
Query 1320 CCTCCTAAAGCTGTTGCAAAGCTCGCTGCAGTAGCAGCATTGTGTGTGCAATATGAATCA 1379
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1313 CCTCCTAAAGCTGTTGCAAAGCTCGCGGCAGTAGCAGCGTTGTGTGTGCAATATGAATCA 1372
Query 1380 GAGTTTAGGCCAAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGTCATCA 1439
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGTTTAGGCCGAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGTCATCA 1432
Query 1440 ACAGCAGCAGCTGTACCAGTCCAGGAAGCCTGATTCTTCTGTGCAATAGCAACAATGGAA 1499
|||||||||||||| |||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 1433 ACAGCAGCAGCTGTTCCAGTCCAGGAAACCTGATTCTTCTGTGCCATAATAATAATGGAA 1492
Query 1500 GATTGGGTTCGGTTTCAGTTGTTGCCATACCGTATAAATGTGTTCTTAAAGAGAGTCTTT 1559
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GATTGGTTTCTGTTTCAATTGTTGCCATACCGTATAAATGTGTTCTTAAAGAGAGTCTTT 1552
Query 1560 TTGTC-GAGGCTTTTCTTCAGTTGGGATGTATATGTTTT-ATTAAGGTGATGAGTAGTGA 1617
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1553 TTGTCTGAGGCTTTTCTTCAGTTGGGATGTATATGTTTTTATTAAGGTGATGAGTAGTGA 1612
Query 1618 TTTGGTGTGTCTTTTCAAATGCTTTG-TGGAGTCTGTTT-TT-C--CTTATAAAAATTTA 1672
||||||||||||||||||||| |||| |||||||||||| || | ||||||| ||| ||
Sbjct 1613 TTTGGTGTGTCTTTTCAAATG-TTTGGTGGAGTCTGTTTCTTTCTTCTTATAACAATCTA 1671
Query 1673 TTCTAAATCTGGTTTGTATTTTGGGGGTCTTCTTTGCTCTTTCTTCATTAACAGAATACT 1732
||||| ||||||||| | || | || |||| || | ||| | |||| ||||||
Sbjct 1672 TTCTATATCTGGTTT-T-TT--G-----CT-CTTT-CT-T--CTT--T-AACATAATACT 1714
Query 1733 AATTATAAGCTTTT-CATATACAAACCTTGAAAGGAATTTTCATCAGTT 1780
||||||||| |||| ||||||||| | ||||||||||||||||||||||
Sbjct 1715 AATTATAAGTTTTTTCATATACAATC-TTGAAAGGAATTTTCATCAGTT 1762
> Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1
Length=1563
Score = 1092 bits (591), Expect = 0.0
Identities = 1010/1210 (83%), Gaps = 37/1210 (3%)
Strand=Plus/Plus
Query 255 ATGGATTC-TGATTACCATCGCCGTGGTCTGGTGGCAAACGATCGTTCAC-CAGCTCAGT 312
||||| || ||||| ||||| ||||||| ||||| || |||||| ||| ||| | |
Sbjct 172 ATGGA-TCGTGATTTTCATCGTCGTGGTCAAGTGGCGAATGATCGTACACAAAGC-AACT 229
Query 313 TTGTTAGGCTGGATAAACCGAGAGCCGTAGACGATCTCT-ATATAGGCAAGAGAGAAAAG 371
||||| | |||||||||||||||| ||||||||| | | | ||||||||||||| |||
Sbjct 230 TTGTTCGATTGGATAAACCGAGAGCTGTAGACGATAT-TGACATAGGCAAGAGAGGGAAG 288
Query 372 ATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTA-CCATTCTTCTGAAAA 430
||||||||||||||||||||| |||| | || ||||| |||| ||| | ||||| |
Sbjct 289 ATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACAAGAATCTTACCCA-ACAGCTGAACA 347
Query 431 TGAA-CACCTCAGAA--GC-CCTAAGCACCACAATGATTTTGGGCATCAC-ACTAGAAAA 485
| || | | | | || | |||| | ||| | || | ||| | | || || ||||||
Sbjct 348 T-AACCGCTTGAAAACCCCTCCTACTCGCCATTACGACTATGGACGTAACAACAAGAAAA 406
Query 486 CCA-CAGGCGGCTGTGAAGCCTGATGCT-TTGAAGGAGCCTCCAT-CTATTGATGTGCCT 542
|| || || ||||||||||| || | |||||||||||||| | | || || || |||
Sbjct 407 -CACCA-GCTCCTGTGAAGCCTCCTG-TCTTGAAGGAGCCTCC-TCCCATCGACGTCCCT 462
Query 543 GCATTGTCATTGGATGAGTTGAAAGAAAAGAC-CGATAACTTTGGATCAAAGTCATTGAT 601
||| ||||||||| |||| | ||||||||||| | | || |||||||||||| |||||||
Sbjct 463 GCAATGTCATTGGTTGAGCTCAAAGAAAAGACTC-AGAATTTTGGATCAAAGGCATTGAT 521
Query 602 TGGTGAAGGATCTTACGGCAGAGCCTATTATGCAACCTTGAAAGATGGAAAGGCTGTCGC 661
||| |||||||| || || |||| || ||||||| ||| || ||||||||||| || ||
Sbjct 522 TGGAGAAGGATCCTATGGAAGAGTGTACTATGCAAACTTTAATGATGGAAAGGCCGTGGC 581
Query 662 GGTGAAGAAGCTTGACAATGCAGCGGAACCTGAATCAAATGTTGAGTTCTTGACTCAGGT 721
||||| ||||| || ||| || | ||||||||| ||||||| |||||||||||||||||
Sbjct 582 TGTGAAAAAGCTCGATAATTCATCTGAACCTGAAACAAATGTCGAGTTCTTGACTCAGGT 641
Query 722 CTCTAGGGTTTCCAAGCTGAAGCA-CGATAATTTTGTTGAGC-TCTTCGGTTATTGTGTT 779
||| | ||||| | |||||| | || ||||||||| ||| |||| |||||||||||
Sbjct 642 CTCGAAAGTTTCGAGGCTGAA-AAGTGACAATTTTGTTCAGCTTCTT-GGTTATTGTGTA 699
Query 780 GAAGGGAA-TTTCCGCATTCTTGCGTATGAGTTTGCTACTATGGGATCTTTACATGACAT 838
||||| || || || | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 700 GAAGGAAACCTT-CGTGTCCTTGCATATGAGTTTGCTACTATGGGATCTTTACATGACAT 758
Query 839 CTTACACGGGAGGAAAGG-AGTCCAAGGAGCACAACCAGGTCCTACGCTTGACTGGATCC 897
|||||||||||| ||||| ||| |||||||||||||| ||||| || ||||| ||||| |
Sbjct 759 CTTACACGGGAG-AAAGGGAGTGCAAGGAGCACAACCTGGTCCAACACTTGAGTGGATGC 817
Query 898 AACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTTGAGTATTTGCATGAGAAAGTTC 957
|||| ||| || | || ||||||||||||| |||||| || || || || |||||||| |
Sbjct 818 AACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGACTAGAATACTTACACGAGAAAGTAC 877
Query 958 AACCTGCAGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTT-GAAGATTTT 1016
||||| | || |||||||||||||| |||||||||||||||||| | ||| ||||||||
Sbjct 878 AACCTCCGGTTATACACAGAGATATCCGATCTAGCAATGTGCTTAT-TTTCGAAGATTTC 936
Query 1017 AAAGCCAAGATCGCTGATTTTAATCTATCGAACCAATCTCCTGATATGGCTGCTCGTCTT 1076
||||||||||| |||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct 937 AAAGCCAAGATTGCTGATTTTAATCTTTCTAATCAAGCTCCTGATATGGCTGCTCGTCTT 996
Query 1077 CATTCTACCAGAGTTTTGGGAACCTTCGGTTACCACGCACCAGAGTATGCGATGACTGGT 1136
||||| || ||||||||||| || |||||||| ||||||||||| ||||||||||| ||
Sbjct 997 CATTCCACTAGAGTTTTGGGGACATTCGGTTATCACGCACCAGAATATGCGATGACAGGA 1056
Query 1137 CAACTGACACAGAAGAGTGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCT-CTTGAC 1195
|| |||||||||||||||||||||| |||||||| || |||||||||||||| ||| ||
Sbjct 1057 CAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAGCTTCTT-AC 1115
Query 1196 TGGTAGGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGGC 1255
|| || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1116 CGGGAGAAAACCGGTAGATCATACGATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGGC 1175
Query 1256 TACTCCAAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACT-AAAGGGAG 1314
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1176 TACTCCAAGGCTGAGTGAAGACAAAGTGAAGCAATGTGTAGATCCAAAACTCAAAGG-AG 1234
Query 1315 AATATCCTCCTAAAGCTGTTGCAAAGCTCGCTGCAGTAGCAGCATTGTGTGTGCAATATG 1374
| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |
Sbjct 1235 AGTATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCGGTTGCAGCGTTGTGTGTGCAATACG 1294
Query 1375 AATCAGAGTTTAGGCCAAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGT 1434
|| |||||||||||||||||||||||||||| ||||||||||||||||| | || ||||
Sbjct 1295 AAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACCGCTCTTAAGGT 1354
Query 1435 CATCAACAGC 1444
|| |||||||
Sbjct 1355 CAGCAACAGC 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5