BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59360.1
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486402 jgi|Araly1|486402|fgenesh2_kg.5__2394__AT3G59360.2 2665 0.0
Ahg322000 jgi|Araly1|322000|fgenesh1_pm.C_scaffold_4002057 540 2e-152
> Ahg486402 jgi|Araly1|486402|fgenesh2_kg.5__2394__AT3G59360.2
Length=1866
Score = 2665 bits (1443), Expect = 0.0
Identities = 1602/1675 (96%), Gaps = 25/1675 (1%)
Strand=Plus/Plus
Query 208 TTGATTATTCACTCTGGAGCTCGAGTTCTGGATCCGTGTGGCTGGAGGGAATGTTCTGTT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 TTGATTATTCACTCTGGAGCTCGAGTTCTGGATCCGTGTGGCTGGAGGGAATGTTTTGTT 234
Query 268 AAGCTGATTGTTTAGGCTTGTTGGATCAGTATAGA-AATTGTCAGATTGAGAAAGACAAC 326
|||||||||||||||||||||||| ||||| || | |||||||| |||||||||| ||
Sbjct 235 AAGCTGATTGTTTAGGCTTGTTGGCTCAGTCTA-ATAATTGTCATATTGAGAAAG---AC 290
Query 327 AAATGAAGAACGGTATAGCTGAGTGCCCTG-CATGTCATTCAAAATTGGTCTCTCCTGGT 385
|||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||
Sbjct 291 AAATGAAGAACGGTATAGCTGAGTGCAGTGTC-TGTCATTCAAAATTGGTCTCTCCCGGT 349
Query 386 AGCAAAACTATTTCTAGGGCTTATGACGACCACAAGATTAGGGTATCCTCAAAACAACGT 445
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 350 AGCAAAACTATTTCCAGGGCTTATGATGACCACAAGATTAGGGTTTCCTCAAAACAACGT 409
Query 446 GTCCTCAATGTCCTTTTGGTTGTAGGTGATTGCATGCTTGTTGGTCTCCAGCCTGTCTTG 505
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 410 GTCCTCAATGTCCTTTTGGTAGTAGGTGATTGCATGCTTGTTGGTCTACAGCCTGTCTTG 469
Query 506 GTGTATATGTCGAAGGTGGATGGGAAATTCAACTTCAGTCCTATTAGCGTCAACTTCTTG 565
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GTGTATATGTCGAAGGTTGATGGGAAATTCAACTTCAGTCCTATTAGCGTCAACTTCTTG 529
Query 566 ACAGAAATCGCAAAAGTTATTTTTGCGATTGTGATGCTTTTAATCCAGGCCAGGCACCAA 625
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 530 ACAGAAATCGCAAAAGTTATTTTTGCGATCGTGATGCTTTTAATCCAGGCCAGGCACCAA 589
Query 626 AAAGTTGGAGAGAAGCCTCTTCTATCCGTTTCCACATTTGTCCAGGCAGCCCGAAATAAT 685
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 590 AAAGTTGGAGAGAAGCCTCTTCTATCCGTTTCCACATTTGTCCAGGCAGCTCGAAATAAT 649
Query 686 GTGCTTCTTGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTGCTTCTTGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATG 709
Query 746 CAGCTATATTTCAATCCTGCTACTGTAAAGATGCTTAGCAACCTAAAGGTTCTGGTCATC 805
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CAGCTATATTTTAATCCTGCTACTGTAAAGATGCTTAGCAACCTAAAGGTTCTGGTCATT 769
Query 806 GCTGTTCTATTAAAGATGGTAATGAAGCGGCGGTTTTCTATCATACAGTGGGAGGCACTT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GCTGTTCTATTAAAGATGGTAATGAAGCGGCGGTTTTCTATCATACAGTGGGAGGCACTT 829
Query 866 GCTCTGTTGCTGATAGGGATTAGTGTAAACCAATTACGTTCTCTTCCTGAAGGTGCTACA 925
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 830 GCTCTGCTGCTGATAGGGATTAGTGTAAACCAACTACGTTCTCTTCCTGAAGGTGCTACA 889
Query 926 GCCATTGGAATTCCTCTTGCTACGGGTGCATACGTCTGCACCGTTATCTTTGTCACTGTC 985
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 890 GCCATTGGAATTCCTCTTGCTACGGGTGCATACGTCTGTACCGTTATCTTTGTTACTGTC 949
Query 986 CCGTCAATGGCATCTGTCTTCAACGAGTATGCTCTAAAGAGTCAGTATGACACAAGCATA 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CCGTCAATGGCATCTGTCTTCAACGAGTATGCTCTAAAGAGTCAGTATGACACAAGCATC 1009
Query 1046 TATCTTCAGAATTTATTCCTCTATGGTTATGGTGCAATATTCAACTTTCTTGGAATACTA 1105
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1010 TATCTTCAGAATTTATTTCTCTATGGTTATGGTGCGATATTCAACTTTCTTGGAATACTA 1069
Query 1106 GGAACTGTTATATATAAAGGTCCTGGCAGCTTTGACATCCTACAAGGACATTCTAGGGCT 1165
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1070 GGAACTGTTATATATAAAGGTCCTGGCAGCTTTGATATCCTACAAGGACATTCTAGGGCT 1129
Query 1166 ACCATGTTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCGTCCTTTTTCTTCAAA 1225
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1130 ACCATGTTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCCTCCTTTTTCTTCAAA 1189
Query 1226 TATGCAGATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACTGGCATA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1190 TATGCAGATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACGGGCATA 1249
Query 1286 GCATCTGCTGCGCTCTTTGGACATGTTATAACCATGAACTTCCTTCTCGGAATTTCTATC 1345
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1250 GCATCTGCAGCGCTCTTTGGACATGTTATAACCATGAACTTTCTTCTTGGAATTTCTATC 1309
Query 1346 GTTTTCATTTCGATGCACCAGTTCTTTTCACCACTTGCCAAAGCGAGAGACGAGCAACAA 1405
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1310 GTTTTCATTTCAATGCACCAGTTCTTTTCACCACTTGCCAAAGTGAGAGACGAGCAACAA 1369
Query 1406 CAGAATGGGAACCTAGAACTAGGCAACACAAAGGATACTCACAGGGCTAATGAATCATTC 1465
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1370 CAGAATGGGAACCTAGAACTAGTCAATGCAAAGGATACTCACAGGGCTAATGAATCATTC 1429
Query 1466 ATCAACATGGCCGCAGGAGCAAATGAAGAGGCTAGTCACCGCGGTGAATCAGACGACAGG 1525
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1430 ATCAACATGGCCGCAGGGGCAAATGAAGAGGCTAGTCACCGTGGTGAATCAGACGACAGA 1489
Query 1526 ACTCCACTGCTTCCCAGATGAAAAGTTTCTTAAA--T-G--A-----TTTTTGTTCGGAA 1575
|| ||| |||||||||||||||| |||||||||| | | | ||||||||| |||
Sbjct 1490 ACCCCATTGCTTCCCAGATGAAA-GTTTCTTAAAAGTAGGTACAGGATTTTTGTTCTGAA 1548
Query 1576 GAATTATTTTGGCCAAGAATATTCTAGAAATTGGGGG-TTTTCCATTCGTATACTAGCAG 1634
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 1549 GAATTCTTTTGGCCAAGAATATTCTAGAAATTGGGGGGTTTTCCAGTCGTATACTAGTAG 1608
Query 1635 AGGAAACAGTGAAGCAAACTTCATGACACCAACTCTTACTTCTCTCAAGAGTCGGTTTTA 1694
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AGGATACAGTGAAGCAAATTTCATGACACCAACTCTTACTTCTCTCAAGAGTCGGTTTTA 1668
Query 1695 AAGTTCGTTGAAGAACCTCTCAAGTCTGAAGCTGTATTGTTTTAAGATAGAGTGAGAACA 1754
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 A-GTTCGATGAAGAACCTCTCAAGTCTGAAGCTGTATTGTTTTAAGATAGAGTGAGAACA 1727
Query 1755 AAATTGGTAAGTGAT-ATAT--GTATTTTGGATATATAATATTTGTATTCTTTGGTTTTT 1811
|| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AACTTGGTAAGTGATGATATATGTATTTTGGATATATAATATTTGTATTCTTTGGTTTTT 1787
Query 1812 GCAAAATATCAGGTCACACTTTTTTGCTCTTGTTTATACAATTACTCTCACAGTT 1866
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1788 GCAAAATATCAGGTCAC--TTTTTTGCTCTTGTTTATACAATTACTCTCACAGTT 1840
Score = 235 bits (127), Expect = 8e-61
Identities = 162/177 (92%), Gaps = 9/177 (5%)
Strand=Plus/Plus
Query 1 TTGTGAAATCAAAGCAAAAAAGAGAGAAGGAGAGGTCGTGTTAGATAATTAGAGCGCACT 60
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 7 TTGTGAAATCAAAGCAAAAAAGAGAG-A-GAGAGGTCGTGTTAGATAATTAGAGCGCACT 64
Query 61 TGCGAGCAACAACGAACGACGACCCACTGATTCAATCTCCTCCTCTCTGCATATTCCTTG 120
||||| ||||||| ||||||||||||||||||| || | || ||| |||||||||||
Sbjct 65 TGCGAACAACAACCAACGACGACCCACTGATTC--TC-C-TC-TCT--GCATATTCCTTC 117
Query 121 GCATCTTTTCTGGTACCGAAGCTGAGTCTCTGGAGAGTTTCTAGATCTTCTTCAATT 177
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 118 GCATCTTTTCTGGTACCCAAGCTGAGTCTTTGGAGAGTTTCTAGATCTTGTTCAATT 174
> Ahg322000 jgi|Araly1|322000|fgenesh1_pm.C_scaffold_4002057
Length=2415
Score = 540 bits (292), Expect = 2e-152
Identities = 396/446 (89%), Gaps = 7/446 (2%)
Strand=Plus/Plus
Query 1052 CAGAATTTATTCCTCTATGGTTATGGTGCAATATTCAACTTTCTTGGAATACTAGGAACT 1111
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 898 CAGAACTTATTCCTCTATGGTTATGGTGCGATATTCAACTTCCTTGGAATACTTGGAACT 957
Query 1112 GTTATATATAAAGGTCCTGGCAGCTTTGACATCCTACAAGGACATTCTAGGGCTACCATG 1171
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 958 GTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGGGCTACTGTG 1017
Query 1172 TTTTTGATACTGAACAACGCAGCACAAGGGATTTTATCGTCCTTTTTCTTCAAATATGCA 1231
|| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1018 TTCCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCA 1077
Query 1232 GATACAATCTTGAAGAAATATTCATCGACAGTTGCCACAATATTTACTGGCATAGCATCT 1291
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1078 GATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTTACTGGAATAGCATCT 1137
Query 1292 GCTGCGCTCTTTGGACATGTTAT-AACCATGAACTTCCTTCTCGGAATTTCTATCGTTTT 1350
|| || |||||||||||| | || ||||||||| || ||||| ||||||||||| |||||
Sbjct 1138 GCAGCACTCTTTGGACATAT-ATTAACCATGAATTTTCTTCTGGGAATTTCTATAGTTTT 1196
Query 1351 CATTTCGATGCACCAGTTCTTTTCACCACTTGCCAAAGCGAGAGACGAGCAACAACAGAA 1410
|||||| ||||| |||||||||||||| ||| | ||||| | ||||||||||||| | |
Sbjct 1197 CATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGACGAGCAACAA-A-AC 1254
Query 1411 TGGGAACCTAGAACTAGGCAACACAAAGGATA-CTCACAGGGCTAATGAATCATTCATCA 1469
|| |||||||| ||| || ||||||| | || |||||||| || ||||||||||
Sbjct 1255 -GGAAACCTAGAGTTAGTTGACGGAAAGGATGGC-CATAGGGCTAAAGACTCATTCATCA 1312
Query 1470 ACATGGCCGCAGGAGCAAATGAAGAG 1495
||||||| ||||||||||||||||||
Sbjct 1313 ACATGGCAGCAGGAGCAAATGAAGAG 1338
Score = 444 bits (240), Expect = 1e-123
Identities = 359/415 (87%), Gaps = 14/415 (3%)
Strand=Plus/Plus
Query 344 GCTGAGTGC-CCTGCATGTCATTCAAAATTGGTCTCTCCTGGTAGCAAAACTATTTCTAG 402
||||||||| | | ||||| ||||| ||||| ||||| |||||||| ||||||| ||
Sbjct 4 GCTGAGTGCAGC-GTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGCAAAGCTATTTCAAG 62
Query 403 GGCTTATG---ACGAC--C-ACAAGATTAGGGTATCCTCAAAACAACGTGTC-CTCAATG 455
|||||||| || || | |||||||||| ||||||||||||||||| | | |||||||
Sbjct 63 GGCTTATGACAACTACAACTACAAGATTAGAGTATCCTCAAAACAACGAG-CTCTCAATG 121
Query 456 TCCTTTTGGTTGTAGGTGATTGCATGCTTGTTGGTCTCCAGCCTGTCTTGGTGTATATGT 515
|| ||||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 122 TCTTTTTGGTAGTTGGTGACTGCATGCTAGTTGGTCTACAGCCCGTCTTAGTGTACATGT 181
Query 516 CGAAGGTGGATGGGAAA-TTCAACTTCAGTCCTATTAGCGTCAACTTCTTGACAGAAATC 574
| || |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 CTAAAGTGGAT-GGAAAGTTCAACTTTAGTCCTATTAGCGTCAACTTCTTGACAGAAATT 240
Query 575 GCAAAAGTTATTTTTGCGATTGTGATGCTTTTAATCCAGGCCAGGCACCAAAAAGTTGGA 634
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 241 GCAAAAGTTATTTTTGCGATTGTCATGCTATTATTCCAGGCCAGGCACCAAAAAGTTGGA 300
Query 635 GAGAAGCCTCTTCTATC-CGTTTCCACATTTGTCCAGGCAGCCCGAAATAATGTGCTTCT 693
||||| ||||| ||||| | ||||||| |||||||||||||| || || |||||||||||
Sbjct 301 GAGAAACCTCTACTATCTC-TTTCCACGTTTGTCCAGGCAGCTCGGAACAATGTGCTTCT 359
Query 694 TGCTGTTCCAGCCCTGTTGTATGCAATTAATAACTATCTGAAGTTCACAATGCAG 748
||||| ||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 360 CGCTGTACCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTTCACAATGCAG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71457299620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5