BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59380.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938953 jgi|Araly1|938953|scaffold_503144.1 1639 0.0
> Ahg938953 jgi|Araly1|938953|scaffold_503144.1
Length=1022
Score = 1639 bits (887), Expect = 0.0
Identities = 964/1002 (96%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 12 TTGGATCGGAGTCGGGGAACATGAATTTCGACGAGACCGTGCCACTGAGCCAACGATTGG 71
|||||||||||||| |||||||| |||||||||||||||||||||||||||| || | ||
Sbjct 1 TTGGATCGGAGTCGAGGAACATGGATTTCGACGAGACCGTGCCACTGAGCCAGCGGTCGG 60
Query 72 AGTGGTCAGACGTGGTCCCATTGACTCAGGACGATGGTCCGAATCCAGTGGTGCCAATTG 131
||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| || |
Sbjct 61 AGTGGGCAGACGTGGTCCCGTTGACTCAGGACGATGGCCCGAATCCGGTGGTGCCGATCG 120
Query 132 CCTACAAGGAAGAGTTCCGCGAGACTATGGATTACTTCCGTGCGATTTACTTTTCCGACG 191
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CCTACAAGGAAGAGTTCCGCGAGACTATGGATTACTTTCGTGCGATTTACTTTTCCGACG 180
Query 192 AGCGATCTCCTCGCGCACTACGACTCACGGAAGAAACCCTCCTCTTAAACTCCGGCAACT 251
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 181 AGCGATCTCCTCGCGCACTACGACTCACGGAAGAAACGCTCCGCTTAAACTCCGGCAACT 240
Query 252 ACACAGTGTGGCATTTCAGGCGCCTAGTACTCGAGGCCCTTAATCACGACTTGTTTGAAG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACACAGTGTGGCATTTCAGGCGCCTAGTACTCGAGGCCCTTAATCACGACTTGTTTGAAG 300
Query 312 AACTCGAGTTCATCGAACGCATTGCTGAGGATAACTCTAAGAACTACCAACTGTGGCATC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTCGAGTTCATCGAACGCATTGCTGAGGATAACTCTAAGAACTACCAACTGTGGCATC 360
Query 372 ATCGGCGATGGGTTGCAGAGAAACTGGGTCCTGATGTTGCAGGGAGAGAACTTGAATTTA 431
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGGCGATGGGTTGCAGAGAAATTGGGTCCTGATGTTGCAGGGAGAGAACTTGAATTTA 420
Query 432 CCCGTAGAGTACTTTCACTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCGTAGAGTACTTTCACTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGA 480
Query 492 CACTACGGGCATTAGGAGGATGGGAAGATGAGCTCGATTACTGTCACGAGCTCCTTGAAG 551
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCTACGGGCATTAGGAGGATGGGAAGATGAGCTCGATTACTGTCACGAGCTCCTTGAAG 540
Query 552 CTGACGTCTTTAACAATTCCGCCTGGAATCAGAGGTATTATGTCATCACCCAATCTCCT- 610
|||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||
Sbjct 541 CTGACGTCTTTAACAATTCCGCCTGGAATCAGAGGTATTACGTCATTACTCGATCTCCTC 600
Query 611 TTGTTGGGAGGCCTAGAAGCCATGAGAGAATCTGAAGTAAGCTACACAATCAAAGCCATT 670
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 TT-TTGGGAGGCCTAGAAGCCATGAGAGAATCTGAAGTAAGCTACACAATCAAAGCAATT 659
Query 671 TTAACCAATCCTGCAAACGAGAGCTCATGGCGATACCTAAAAGCTCTTTACAAAGACGAC 730
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 TTAACCAATCCTGCAAACGAGAGCTCATGGCGATACCTGAAAGCTCTTTACAAAGACGAC 719
Query 731 AAAGAATCCTGGATTAGTGATCCAAGTGTTTCCTCAGTCTGTTTGAATGTTCTATCCCGC 790
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AAAGAATCCTGGATTAGTGATTCAAGTGTTTCCTCAGTCTGTTTGAATGTTTTATCCCGC 779
Query 791 ACAGATTGCTTCCATGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGTGATGGACTG 850
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 ACGGATTGCTTCCATGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGCGATGGACTG 839
Query 851 AGACCAACCAACGAGCATAAAGACTCAGTGAGAGCTCTAGCTAATGAAGAACCAGAGACT 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 AGACCAACCAACGAGCATAAAGACTCAGTGAGAGCTCTAGCTAATGAAGAACCAGATACT 899
Query 911 AACTTGGCCAATTTGGTGTGTACTATTCTTGGTCGTGTAGATCCTGTAAGAGCTAACTAT 970
|||||||| | |||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 900 AACTTGGCTATTTTGGTGTGTACCATTCTTGGTCGTGTAGATCCTATAAGAGCTAATTAT 959
Query 971 TGGGCATGGAGGAAGAGCAAGATTACAGTGGCAGCAATTTGA 1012
||||||||||| |||||||||||||| || |||||||| |||
Sbjct 960 TGGGCATGGAGAAAGAGCAAGATTACTGTAGCAGCAATGTGA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5