BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59390.2
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486406 jgi|Araly1|486406|fgenesh2_kg.5__2398__AT3G59390.2 1546 0.0
> Ahg486406 jgi|Araly1|486406|fgenesh2_kg.5__2398__AT3G59390.2
Length=960
Score = 1546 bits (837), Expect = 0.0
Identities = 924/966 (96%), Gaps = 6/966 (1%)
Strand=Plus/Plus
Query 1 CGTGATTTGGTCGAAAGATTGGTTCTTTCTCCGACAAGAATTATGTCCAAATCTGGGTTT 60
|||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||
Sbjct 1 CGTGATTTGGTCGAAAGATTTGTTCTTTCTCCGACAAG-A--ATGTCCACATCTGGGTTT 57
Query 61 AGTCTGCTGTTCCTCGTTCTTCTACTTATCATGGGTTTCTTATTTCCGTTGAGAGTTTCT 120
|| | |||||||||| | |||||| | ||||||||||||| ||||||||||||||||||
Sbjct 58 AG--T-CTGTTCCTCGCTGTTCTACATCTCATGGGTTTCTTGTTTCCGTTGAGAGTTTCT 114
Query 121 GCAATTAGGAAGGATATCGGATTTTTGGAAGAGCGGAGTTGCAGAACAACTGTCCAAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GCAATTAGGAAGGATATCGGATTTTTGGAAGAGCGGAGTTGCAGAACAACTGTCCAAGGA 174
Query 181 AGATACTTGATCTCCGATGATGAAGGCAATGTGTGTGATGCTTTGTCATTGGAATCTCGA 240
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 175 AGATACTTGATCTCGGATGATGAAGGCAATGTGTGTGATGCTCTGTCATTGGAATCTCGA 234
Query 241 ACTCGTTGTTGTCCATGGAAAGGAGAAAGATTCTCTTGTCATGGATGCAACATACTTTCA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 235 ACCCGTTGTTGTCCATGGAAAGGAGAAAGATTCTCTTGTCATGGATGCAACCTCCTTTCA 294
Query 301 CAATGCTGCAACTCTTATGAATTTTGCGTTTCTTGCTGCTTGAATCCGTCTCAGACGCTT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 295 CAATGCTGCAACTCTTATGAATTTTGCGTTTCTTGCTGCTTAAATCCGTCTCGGACGCTT 354
Query 361 CTTGAGAAGGTGGTTAAGGTCAAAGTTGCAAAGCCGGCTACATCAGGGACTTACAAGAGT 420
|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 355 CTTGAGAAGGTGGTTAAGGTAAAAGTTGCAAAGCCGGATACAGCAGGGACTTACAAGAGT 414
Query 421 GTATTTGATTTTTGTGCCGGGAGATGCCGGCATAACTCTGAGAGTGTGGTTCACGAAAAT 480
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 415 GTATTTGATTTTTGTGCTGGGAGATGCCGCCATAACTCTGAGAGTGTGGTTCATGAAAAT 474
Query 481 GCTTACCACAGCGAGTTTCACCATTGTTTTTCTCTGACATCAAATGCTTCAGGTGCTAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCTTACCACAGCGAGTTTCACCATTGTTTTTCTCTGACATCAAATGCTTCAGGTGCTAAT 534
Query 541 CTTACACAAGTTGAAACAAGACTTCTTGGTATTGACGTTATTGTCGGAAGTCAAGGAGAT 600
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 535 CTTACACAAATTGAAACAAGACTTCTTGGCATTGACGTTATTGTTGGAAGTCAAGGAGAT 594
Query 601 TCATGCGATGCAGTTTGCAAATCACGTGGACAATTGTGTGTGATGAATAAACTCTCACTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCATGCGATGCAGTTTGCAAATCACGTGGACAATTGTGTGTGATGAATAAACTCTCACTT 654
Query 661 CTAAACCAGTGTGACGTTATGAAAAGATACATGAACTGCAAAGGGTCGTGTTTAGCAAGT 720
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 655 CTAAACCAATGTGACGTTATGAAAAGATACATGACCTGCAAAGGGTCGTGTTTAGCAAGT 714
Query 721 GCCGGGGCTGACCAACCTGCTGAAGTTGTCGAAGATGCGCCGAGAGATTTGTATCCAGGC 780
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 715 GCCGGGGCTGACCAACCTGCCGAAGTTGTCGAAGATGCACCCAGAGATTTGTATCCTGGC 774
Query 781 GCGTGTTTGTATACCCGGACACAATCATTGCTTTCCTGTGACGGTTCACACCAACACACC 840
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 GCGTGTTTGTATACCCGGACACAATCAATGCTTTCCTGTGACGGTTCACACCAACACACC 834
Query 841 CGACGACTCTGCCCATGTGCCTAGAAGCTAGTCAGTATTAAGACTTATGCCATACTTTTT 900
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 835 CGACGACTCTGCCCATGTGCCTAGAAACTAGTCAGTATTAAGACTTATGACATACTTTTT 894
Query 901 TCCTCCTTATTGTAGCAGTTTTAGAATGCTCTGATCATGTAATTTTCTCATGGTGAAAGA 960
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 TCCGCCTTCTTGTAGCAGTTTTAGAATGCTCTGATCATGTAATTGTCTCATGGTGAAAGA 954
Query 961 ACACAT 966
| ||||
Sbjct 955 AAACAT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5