BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59400.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486407 jgi|Araly1|486407|fgenesh2_kg.5__2399__AT3G59400.1 1515 0.0
> Ahg486407 jgi|Araly1|486407|fgenesh2_kg.5__2399__AT3G59400.1
Length=989
Score = 1515 bits (820), Expect = 0.0
Identities = 945/1002 (94%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 1 GACGTGActcttctctctcttcct-ctccatcaatggcgaccacaaactctctccaccac 59
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 GACGTGACTCTTCTCTCTCTTCTTCCTCCATCAATGGCGACCACAAACTCTCTCCACCAC 60
Query 60 caccaccactcctctccttcttacacacaccaccGCAACAATCTCCATTGCCAATCTCAC 119
|||||||||| | || |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 61 CACCACCACT-C-CT-CTTCTTACACACACCACCGCCACAATCTCCATTCCCAATCTCAC 117
Query 120 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTAATC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTTATC 177
Query 180 TGCTCTGCTTC-T--TCCACCTCCTCCTCCACCACCGCCG-TATCT--GCCGTTTCAACC 233
||||||||||| | ||| ||||||||||| || |||||| | ||| ||||||||||||
Sbjct 178 TGCTCTGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGCTGTCTCCGCCGTTTCAACC 237
Query 234 ACAAACGCCTCCGCCACAACTGCCGAAACCGCGACCATATTCGACGTTCTGGAGAACCAT 293
|||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 238 ACAAACGCCTCCGCTACAACTGCCGAAACCGCGACAAAATTCGACGTTTTGGAGAACCAC 297
Query 294 CTCGTCAATCAAAACTTCAGACAAGCCGACGAGGAGACACGGAGATTACTCATTCAGATA 353
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 CTCGTCAATCAAAACTTCCGACAAGCCGACGAGGAGACAAGGAGATTACTCATTCAGATA 357
Query 354 TCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 417
Query 414 CCCGAAGATCTTCAAGCTATCGACAATCTATGGATTAAACACAGTGATGGTAGATTCGGA 473
|||||||||||||| | |||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 418 ACCGAAGATCTTCAAACCATCGACAATCTATGGACTAAACACAGCGATGGGAGATTCGGA 477
Query 474 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 537
Query 534 AAAGTTGAGTGGATGAAGCTTCTTGACACAGAGGTTGTTCAATACAATTACAGAGCGTTT 593
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 AAAGTTGAGTGGATGAAGCTTCTTGATACAGAGGTTGTTCAATACAATTACAGAGCGTTT 597
Query 594 CCTGACGAATTCAAGTGGGAGCTTAACGATGAAACGCCTTTAGGACACTTACCGCTCACA 653
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 CCTGACGAATTCAAGTGGGAGCTTAACAATGAAACGCCTTTAGGACACTTACCGCTCACA 657
Query 654 AACGCCTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 713
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AACGCGTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 717
Query 714 GCTGATGATAACAGTGGAGAAACAGAAGACGAGCTTAACAGAGGTGTTGCGGTGGCTAAG 773
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 718 GCTGATGATAACAGTGGAGAAACAGAAGAAGAGCTAAACAGAGGTGTTGCTGTGGCTAAG 777
Query 774 GAACAGGCAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGATGT 833
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 GAACAGACAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGACGT 837
Query 834 CTTTCTCCTTCttttttttttttttttAATATTGATTTTCTGATATTGTGAAAGTATAAA 893
|||||||||| ||||| |||| || ||| || | |||||||||||||||||||||
Sbjct 838 CTTTCTCCTT-TTTTTATTTTATT---AAT-TT--T---CTGATATTGTGAAAGTATAAA 887
Query 894 CAAATCTCTGTAATCATATCATTAATTAAATCGGATTTCTCTTCAATGTCAGTTCCA-TT 952
||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||
Sbjct 888 CAAATCTCTGTAATCATATCATTAATTAAATTGGGTTTCTCTTCAATGTCAGTTTCAATT 947
Query 953 GTGATTATGGATGTATGAACAAAGCCAGATCATTAGTTAATG 994
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 GTGATTATGGATGTATGAACAAAGTCAGATCATTAGTTAATG 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5