BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59430.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324413 jgi|Araly1|324413|fgenesh1_pm.C_scaffold_5001957 2084 0.0
> Ahg324413 jgi|Araly1|324413|fgenesh1_pm.C_scaffold_5001957
Length=1374
Score = 2084 bits (1128), Expect = 0.0
Identities = 1297/1376 (94%), Gaps = 22/1376 (2%)
Strand=Plus/Plus
Query 54 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 60
Query 114 TTATGCAAGAAGTATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 173
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATGCAAGAAATATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 120
Query 174 GCTTCTTACTTCGAGAAAAATAATTTGAACCCGGTAAGTTTTGGGGTCCCTGGGAATCAA 233
||||||| ||||||||| ||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 121 GCTTCTTTTTTCGAGAAACATAGTTTGAACTCGGTAGGTTTTGGGGTCCCTGTGAATCAA 180
Query 234 GATAGTTCAGCGACAACTTCTAGAGCACCAGC-GATTAGAACATGGAATGTGAAAAGA-- 290
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 181 GATAGTTCAGCGACAACTTCTAGAGCACCA-CTGATTAGAACATGGAATGTGAAAAGAGG 239
Query 291 ----GATTCTTATGGTAACAAATTGGATGTACCTAGAGAGGATTATGTTCAAGGTGCAGT 346
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 240 TTTTGATTCTTATGGTAATAAATTGGATATACCTAGAGAGGATTATGCTCAAGGTGCAGT 299
Query 347 GGCTAGAGAACCAGGCATTATCCTTGGGAATAATACACCGTATCAGGAAAGAAATGGAAA 406
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GGCTAGAGAGCCAGGCTTTATCCTTGGGAATAATACACCGTATCAGGAACGAAATGGAAA 359
Query 407 TGATGGTTTGATTGATTTTACATCTGCTCCTCCTTATATGAGGAAATTGAATGAAAAGGG 466
|||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 360 TGATGGTTTGGTTGATTCTACATCTGTTCCTCCATATATGAGGAAATTGAATGAAAAGGG 419
Query 467 CCCAACAGCAAACTCCAAGAGAGCAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 526
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 CCCAACAGCAAACTCCAAGAGAACAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 479
Query 527 CAGTGGTGATAATCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTGGAAGAGGGTAT 586
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 CAGTGGTGATAGTCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTAGAAGAGGGTAT 539
Query 587 TAGCCTTTCAGTTGATCTAAATTTTAATCCATCAGATTGGATCAATAGCATGAGAGATGA 646
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 540 TAGCCTTTCAGTTGATCTAAATTTCAACCCATCAGATTGGATTAATAGCATGAGAGATGA 599
Query 647 GGTCAATGTATGTGATAGCATGCGCCGCAGAAAATCCCCACATTCTGATCTTGGC----- 701
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 GGTCAATGTATGTGATAGCATGCGTCGCAGAAAATCCCCACATTCTGATCTTGGCATTAA 659
Query 702 --AT--TACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATGGTCATGTAAG 757
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 TAATGCTACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATATTCATGTAAG 719
Query 758 GAGAGAATCATCTTTAAGTCCGCCAATGAAAGACAATGCTCACTTACCTTCTGATCACCA 817
||||||||||||| ||||||| || |||||||||||||||| |||||||||||||| ||
Sbjct 720 GAGAGAATCATCTATAAGTCCTTCAGTGAAAGACAATGCTCAGTTACCTTCTGATCATCA 779
Query 818 TCCCAATGGTGAACGATCTCTAGCATCATCTGCCATAGAACCATGCAACAGAATCAAAGA 877
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 TCCCAATGGTGAACGGTCTCTAGCATCATCTGCCATAGAACCATGCAGCAGAATCAAAGA 839
Query 878 GAGCTCAGACACTTGCAAGGAAAAAAGCGGGCTTAACTTGTCCATACCTGATTCTTCAGG 937
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 840 GAGCTCAGACACTTGCAAGGAAAAAAACGGGCTTAACTTGTCCGTACCTGATTCTTCAGG 899
Query 938 ACCTTGCCAGATTGCATCATCTTGTGTCGAATCATATAGTAAAAGCTGCTGTGTAAATCC 997
|||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 ACCTGGCCATATTGTATCATCTTGTGTCGAATCGTATAGTAAAAGCTGCTGTGTAAATCC 959
Query 998 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGATATGGT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGTTATGGT 1019
Query 1058 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTAGAAATTCCGAAAAATCCATC 1117
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1020 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTTGAAATTCCGGAAAATCCATC 1079
Query 1118 CATGGAAAGCTTTCAAATAG-TCGGAAACTCAAGTACTGTTATATGTCCACGGGGAGCTG 1176
||||||||| ||||||| || ||||||||||||||| ||||||||||||| |||||||||
Sbjct 1080 CATGGAAAGTTTTCAAA-AGGTCGGAAACTCAAGTATTGTTATATGTCCATGGGGAGCTG 1138
Query 1177 GCTCTGAATTATCATCATCAGAAGCAGAGGCCTATCACTCAAACCAGCCGTGTTCTCCTC 1236
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 GTTCTGAATTATCATCATCAGAAGCAGAGGCTTATCACTCAAACCAGCCGTGTTCTCCTC 1198
Query 1237 GTAAGACCAGTAGATCCTCGACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCTA 1296
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 GTAAGACCAGTAGATCCTCAACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCCA 1258
Query 1297 CTAGTTATTCTGAGTCATTCAAGTTCCGTTGCAATGGAGGCAA-AAG-TT-TGCCACCAA 1353
||| |||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 1259 CTAATTATTCTGAGTCATTCAAGTTCCGGTGCAATGGAGGCAAGAACATTCTGCCACCAA 1318
Query 1354 ACACGGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGCGCGGTCAGAGTGA 1409
| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 ATACTGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGTGCGGTCAGAGTGA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5