BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59440.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486411 jgi|Araly1|486411|fgenesh2_kg.5__2403__AT3G59440.1 1016 0.0
> Ahg486411 jgi|Araly1|486411|fgenesh2_kg.5__2403__AT3G59440.1
Length=746
Score = 1016 bits (550), Expect = 0.0
Identities = 655/705 (93%), Gaps = 10/705 (1%)
Strand=Plus/Plus
Query 1 AAGTTCCTCTGTATACCAAACTATCaaaaaaaCTCTCTCCATTTCTGTTCTCAACAAAGC 60
||||||||||||||| ||||| || |||| |||||||||| ||||||||||||||||
Sbjct 1 AAGTTCCTCTGTATAACAAACAATTGAAAACTCTCTCTCCATCTCTGTTCTCAACAAAGG 60
Query 61 CAAGAGTTATGGTGAGAGTCTTTCTTCTCTACAACCTCTTTAACTCCTTTCTTCTTTGTT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAGTTATGGTGAGAGTCTTTCTTCCCTACAACCTCTTTAACTCCTTTCTTCTTTGTT 120
Query 121 TAGTTCCCAAGAAGCTTAGAGTTTTCTTCCCTCCTTCTTGGTACATCGACGACAAGAACC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TAGTTCCCAAGAAGCTTAGAGTTTTCTGCCCTCCTTCTTGGTACATCGACGACAAGAACC 180
Query 181 CACCACCGCCTG-ATGAATC--GGA-AACTGAATCTCCGGTAGATCTAAAACGAGTGTTT 236
|||||| | ||| || | ||| || | | |||||| ||||||||||||||||||
Sbjct 181 CACCACAGTCTGAAT-CCCCGGGGAGAA--G-AGATCCGGTGGATCTAAAACGAGTGTTT 236
Query 237 CAGATGTTCGACAAGAACGGAGATGGACGCATCACAAAGGAAGAGCTGAACGATTCTCTA 296
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 237 CAGATGTTCGACAAGAATGGAGACGGACGCATCACAAAGGAAGAGCTAAACGATTCTCTA 296
Query 297 GAGAATCTAGGAATCTTTATGCCTGACAAAGATCTGATCCAGATGATCCAGAAGATGGAT 356
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 297 GAGAATCTAGGAATCTTTATGCCTGACAAAGATCTGGTCCAGATGATCCAAAAGATGGAT 356
Query 357 GCAAATGGAGATGGG-TGTGTAGACATAAACGAGTTTGAGTCTCTTTATGGTTCGATTGT 415
||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 357 GCAAATGGAGATGGGATC-GTAGACATAAAAGAGTTTGAGTCTCTTTACGGTTCGATTGT 415
Query 416 GGAGGAAAAGGAGGAAGGGGACATGAGAGACGCGTTCAATGTGTTTGATCAAGACGGTGA 475
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 416 GGAGGAAAAGGAGGAAGAGGACATGAGAGATGCGTTCAATGTGTTTGATCAAGACGGTGA 475
Query 476 TGGATTTATCACTGTTGAGGAGTTGAATTCTGTGATGACTTCCTTGGGGCTCAAGCAAGG 535
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 476 TGGGTTTATCACTGTTGAGGAGTTGAAGTCTGTGATGGCTTCCTTGGGGCTCAAGCAAGG 535
Query 536 TAAAACCCTAGAATGTTGTAAAGAGATGATTATGCAAGTGGATGAAGATGGAGATGGTAG 595
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 TAAAACCCTAGAGTGTTGTAAAGAGATGATTAAGCAAGTGGATGAAGATGGAGATGGTAG 595
Query 596 AGTCAATTACAAGGAATTCCTTCAGATGATGAAAAGTGGTGACTTTAGCAATAGATCATG 655
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGTCAATTACATGGAGTTCCTTCAGATGATGAAAAGTGGTGACTTTAGCAATAGATCATG 655
Query 656 AGTTTATTCTGACATGGAGAAGAAGGACCAATATATTTACCTCTA 700
|||| ||||| ||||||||||||||||||||| ||| ||| ||||
Sbjct 656 AGTTGATTCTAACATGGAGAAGAAGGACCAATCTATCTACATCTA 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5