BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59455.1
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486412 jgi|Araly1|486412|fgenesh2_kg.5__2404__AT3G59455.1 604 2e-172
Ahg486404 jgi|Araly1|486404|fgenesh2_kg.5__2396__AT3G59455.1 604 2e-172
> Ahg486412 jgi|Araly1|486412|fgenesh2_kg.5__2404__AT3G59455.1
Length=491
Score = 604 bits (327), Expect = 2e-172
Identities = 445/500 (89%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 1 AGATACTAAGTTATCAGAAAATGAAGAACATTTCATTGATGTTCATCGCCTTGGTTGTAC 60
||||||||| | ||||||||||||||| || | |||||||||||||||||||| | ||||
Sbjct 1 AGATACTAAATAATCAGAAAATGAAGATCAATCCATTGATGTTCATCGCCTTGATGGTAC 60
Query 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTCATTTATGCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTTATTTATGTA 120
Query 121 TGCAACATTTGAAGTTGAACGATAGACCCACGTGGTTGAAGTGTTGTGATAGACTAATAA 180
| |||||| |||| | |||||| |||||||| |||| ||||||||||||||||||
Sbjct 121 TACAACATATGAA----A--GATAGAGCCACGTGGCTGAAATGTTGTGATAGACTAATAG 174
Query 181 TACCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTACAATGGAAAGAAGCTTATC 240
|| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
Sbjct 175 TAGCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTGCAAAAGAAAGATGCTTACC 234
Query 241 GTCTTATGGCTTCTTGTGGAAAGACTGTTCCTCTAAATCAA-AGTCTCAAGTCCTATTTC 299
|||||||||||||||||||||||||| ||||| ||||||| | ||||| | |||| |
Sbjct 235 GTCTTATGGCTTCTTGTGGAAAGACTATTCCTATAAATCAGGA-TCTCAGGAAATATTAC 293
Query 300 AAGTGTGGCTAAAAATAGTCAACCAACAAAAGCAATAAGCGGTCGTCAAGCCGAACCGGA 359
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 294 AAGTGTGGCTAAAAATAGTCAACCAACGAAAGCGATAAGCGGTCGTCAAGCCGAACCGGA 353
Query 360 GATACTTAA-TAAGATTAGT--T-A-ATCAAGTCTTTCCTTGTCtttttttAATCGTAT- 413
||||||||| || ||||||| | | ||| ||| |||||||||||| |||||||||| |
Sbjct 354 GATACTTAAATA-GATTAGTACTTATATCGAGTGTTTCCTTGTCTTCTTTTAATCGT-TC 411
Query 414 AAGTTGTTGCTCTAATTGGCCTTCATTATATTTATGAACCATCTCTCCCACATTCCACGT 473
|||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 412 AAGTTGTTGCTCGAATTGGCCTTGTTTATGTTTATGAACCATCTCTCCCACTTTCCACGT 471
Query 474 TTTTCTTGCTTTTTGGAATT 493
||||||||||||||||||||
Sbjct 472 TTTTCTTGCTTTTTGGAATT 491
> Ahg486404 jgi|Araly1|486404|fgenesh2_kg.5__2396__AT3G59455.1
Length=491
Score = 604 bits (327), Expect = 2e-172
Identities = 445/500 (89%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 1 AGATACTAAGTTATCAGAAAATGAAGAACATTTCATTGATGTTCATCGCCTTGGTTGTAC 60
||||||||| | ||||||||||||||| || | |||||||||||||||||||| | ||||
Sbjct 1 AGATACTAAATAATCAGAAAATGAAGATCAATCCATTGATGTTCATCGCCTTGATGGTAC 60
Query 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTCATTTATGCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 61 TCTTGACATCATTCCCCACTCCAACGCTCTCTTATTGCAAAGAGTCACTTTATTTATGTA 120
Query 121 TGCAACATTTGAAGTTGAACGATAGACCCACGTGGTTGAAGTGTTGTGATAGACTAATAA 180
| |||||| |||| | |||||| |||||||| |||| ||||||||||||||||||
Sbjct 121 TACAACATATGAA----A--GATAGAGCCACGTGGCTGAAATGTTGTGATAGACTAATAG 174
Query 181 TACCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTACAATGGAAAGAAGCTTATC 240
|| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
Sbjct 175 TAGCAGGACCATGTATGTGTAAGTATATTAAAGATCCTGTGCAAAAGAAAGATGCTTACC 234
Query 241 GTCTTATGGCTTCTTGTGGAAAGACTGTTCCTCTAAATCAA-AGTCTCAAGTCCTATTTC 299
|||||||||||||||||||||||||| ||||| ||||||| | ||||| | |||| |
Sbjct 235 GTCTTATGGCTTCTTGTGGAAAGACTATTCCTATAAATCAGGA-TCTCAGGAAATATTAC 293
Query 300 AAGTGTGGCTAAAAATAGTCAACCAACAAAAGCAATAAGCGGTCGTCAAGCCGAACCGGA 359
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 294 AAGTGTGGCTAAAAATAGTCAACCAACGAAAGCGATAAGCGGTCGTCAAGCCGAACCGGA 353
Query 360 GATACTTAA-TAAGATTAGT--T-A-ATCAAGTCTTTCCTTGTCtttttttAATCGTAT- 413
||||||||| || ||||||| | | ||| ||| |||||||||||| |||||||||| |
Sbjct 354 GATACTTAAATA-GATTAGTACTTATATCGAGTGTTTCCTTGTCTTCTTTTAATCGT-TC 411
Query 414 AAGTTGTTGCTCTAATTGGCCTTCATTATATTTATGAACCATCTCTCCCACATTCCACGT 473
|||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 412 AAGTTGTTGCTCGAATTGGCCTTGTTTATGTTTATGAACCATCTCTCCCACTTTCCACGT 471
Query 474 TTTTCTTGCTTTTTGGAATT 493
||||||||||||||||||||
Sbjct 472 TTTTCTTGCTTTTTGGAATT 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20985573950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5