BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59460.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898918 jgi|Araly1|898918|Al_scaffold_0005_2884                    171    4e-42
  Ahg324460 jgi|Araly1|324460|fgenesh1_pm.C_scaffold_5002004           150    5e-36


> Ahg898918 jgi|Araly1|898918|Al_scaffold_0005_2884
Length=951

 Score =  171 bits (92),  Expect = 4e-42
 Identities = 137/158 (87%), Gaps = 6/158 (4%)
 Strand=Plus/Plus

Query  163  AGTTACACAGGCGATGTGACCATGCCTCCGTTCCAAGTGAAGATGCTGCATGTTCATGGT  222
            |||||||||||||||| ||| |||| ||| |||||||||||| || ||| ||||||||||
Sbjct  760  AGTTACACAGGCGATGAGACAATGCGTCCCTTCCAAGTGAAGGTGTTGCGTGTTCATGGT  819

Query  223  TATGGAGGAAATGCGGAAGAGGTGGAACGCTT-ACATAAATTTATTGGGGAGTCGGAATG  281
            |||||||||| |||  ||||| || ||| ||| | | |||||||||||||||||||||||
Sbjct  820  TATGGAGGAACTGCTAAAGAGTTGAAACACTTGA-AGAAATTTATTGGGGAGTCGGAATG  878

Query  282  CGGTGAAGTGGTGCTAGGCTGCGGAAGCTGTGGTGGAT  319
            |||||||||||||||||  || | | ||||||||||||
Sbjct  879  CGGTGAAGTGGTGCTAG--TG-G-AGGCTGTGGTGGAT  912


> Ahg324460 jgi|Araly1|324460|fgenesh1_pm.C_scaffold_5002004
Length=1272

 Score =  150 bits (81),  Expect = 5e-36
 Identities = 193/243 (79%), Gaps = 24/243 (10%)
 Strand=Plus/Plus

Query  11    TGGTGATTCT-TCGCTGTGTTAGACGTGGACTACTTCTACCGGTGTTCAACAATC-TGGT  68
             |||||||| | ||| ||| ||| || ||||||||||||||| ||||||||||||| || |
Sbjct  863   TGGTGATT-TGTCGATGTATTATACATGGACTACTTCTACCCGTGTTCAACAATCTTGTT  921

Query  69    AAGCTTGTCTTTTGGGAGTACGA--AC---A-AA--A-GAGGTTGGAAACTGCTGCCACT  119
             ||  || || |||||||||| ||  ||   | ||  | ||||||||||||||||||||| 
Sbjct  922   AA-TTTATCGTTTGGGAGTAAGAGCACTAAACAAGGACGAGGTTGGAAACTGCTGCCACA  980

Query  120   TCTGATTGAGCAGTCTCCAAAGCTTGAAACTCTAATCATCCAG-------A--GTTACAC  170
             |||| || |||||||||||||||||||||||||||||||||||       |  |||||||
Sbjct  981   TCTGCTTAAGCAGTCTCCAAAGCTTGAAACTCTAATCATCCAGGGTTTGGATAGTTACAC  1040

Query  171   AGGCGATGTGACCATGCCTC-CGTTCCAAGTGAAGATGCTGCATGTTCATGGTTATGGAG  229
             ||| |||||   |||||||| |   |||  ||||| || ||||| | | |||||||||||
Sbjct  1041  AGGGGATGTCTTCATGCCTCTCAA-CCATTTGAAGGTGTTGCATATACTTGGTTATGGAG  1099

Query  230   GAA  232
             |||
Sbjct  1100  GAA  1102



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5