BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59470.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938964 jgi|Araly1|938964|scaffold_503155.1 1384 0.0
> Ahg938964 jgi|Araly1|938964|scaffold_503155.1
Length=801
Score = 1384 bits (749), Expect = 0.0
Identities = 783/800 (98%), Gaps = 0/800 (0%)
Strand=Plus/Plus
Query 423 GATTGATAATGGAGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTGATAATGGTGTAGCTGCTGGGATGATGATGGGGATTCCTGTTGAGCTTGAGGTTAC 60
Query 483 CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGA 120
Query 543 TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCT 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCC 180
Query 603 TGATTCTATTCCTCTGGCTGTTGCAGATATGACAGAGGCTCAAGGAGATGAGCCTTACGT 662
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 181 TGATTCTATTCCTCTGGCAGTTGCAGATATGACAGAGGCTCAAGGGGATGAGCCTTATGT 240
Query 663 TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAA 300
Query 723 AGTAGGGTTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT 782
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTAGGATTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCAT 360
Query 783 AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAGCGGGATAAGGT 842
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 361 AGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAACGGGACAAGGT 420
Query 843 TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGA 480
Query 903 GAACTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCACAATCACTCTTTGATGCC 962
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 AAATTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCATAATCACTCTTTGATGCC 540
Query 963 TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATTCA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATCCA 600
Query 1023 GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGACATCT 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 GGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGGCATCT 660
Query 1083 GGAGATGCTATTTGAACAGATCGAACAGCACAACGAAAGCCTTTCTAAGAGAATCCAACA 1142
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 661 GGAGATGCTATTTGAACAGATCGAACAGCATAACGAAAGCCTATCTAAGAGAATCCAACA 720
Query 1143 CATAGTAGACAATGTGAGGAATCTGGAACAGAGAGATCATCAACAGAACCACCAAGTATA 1202
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 721 CATAGTAGACAATGTGAGGAATCTGGAACAAAGAGATCATCAACAGAACCAGCAAGTATA 780
Query 1203 GTCTTTTGGTCTCTGGTTTT 1222
||||||||||||||||||||
Sbjct 781 GTCTTTTGGTCTCTGGTTTT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5