BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59480.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486413 jgi|Araly1|486413|fgenesh2_kg.5__2405__AT3G59480.1 1783 0.0
> Ahg486413 jgi|Araly1|486413|fgenesh2_kg.5__2405__AT3G59480.1
Length=1189
Score = 1783 bits (965), Expect = 0.0
Identities = 1109/1177 (94%), Gaps = 15/1177 (1%)
Strand=Plus/Plus
Query 28 atctctctctATTTTGCTCAATCTTAATCGTCCGATCAAAACACTCCGACTAAAAATGGC 87
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 ATCTCTCTCT-CTCTGCTCAATCTTAATCGTCCGATCAAAACACTCCGACTAAAAATGGC 75
Query 88 TGCATCTAACGGCGAGAAAAGCTTGATCGTGAGCTTCGGTGAAATGCTCATCGATTTCGT 147
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 76 TGCATCCAACGGTGAGAAAAGCTTGATCGTGAGTTTCGGTGAAATGCTCATCGATTTCGT 135
Query 148 CCCAACCGTCTCCGGTGTATCCCTCGCCGATGCTCCTGGCTTCATCAAAGCCCCCGGTGG 207
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 136 CCCAACTGTCTCCGGCGTATCCCTCGCCGACGCTCCTGGCTTCATCAAAGCCCCTGGTGG 195
Query 208 TGCACCTGCCAACGTTGCCATCGCCATTTCCCGTCTAGGCGGTCGTGCCGCTTTCGTTGG 267
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 196 TGCACCTGCCAACGTTGCTATCGCCATATCCCGTCTTGGCGGTCGTGCCGCTTTCGTCGG 255
Query 268 AAAACTCGGTGACGACGAGTTCGGTCACATGCTCGCCGGAATCTTGAAACAGAACGGTGT 327
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 256 AAAACTTGGTGATGACGAGTTCGGTCACATGCTCGCCGGAATCTTGAAACAGAACGGCGT 315
Query 328 CTCTGCTGAAGGTATCAATTTCGACACTGGAGCCAGGACTGCACTTGCGTTCGTGACACT 387
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 316 CTCTGCCGAAGGTATCAATTTCGACACCGGAGCCAGGACTGCACTTGCGTTCGTGACACT 375
Query 388 AAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCT 447
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAAATCTGACGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCT 435
Query 448 CCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTGCTAAGGTGTTCCACTACGGATC 507
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 436 CCGTCCCGACGAACTCAATCTTGATCTCATCAGATCTGCTAAGGTGTTCCACTACGGATC 495
Query 508 CATAAGCTTGATCGTTGAGCCATGTCGATCTGCTCACTTGAAAGCCATGGAGGTGGCTAA 567
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 496 CATAAGCTTGATCGTTGAGCCATGTCGATCTGCTCACCTGAAAGCCATGGAGGTGGCTAA 555
Query 568 GGAAGCTGGTGCGTTGCTTTCATATGATCCGAACTTGAGGCTTCCTTTGTGGCCCTCGAA 627
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 556 AGAAGCTGGTGCGTTGCTCTCTTATGATCCGAACTTGAGGCTTCCTTTGTGGCCCTCCAA 615
Query 628 GGAGGAGGCTCAGAAGCAGATTCTTAGCATCTGGGACAAAGCTGAAGTGATCAAAGTCAG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GGAGGAGGCTCAGAAGCAGATTCTTAGCATCTGGGACAAAGCTGAAGTGATCAAAGTCAG 675
Query 688 CGATGAAGAGCTTATGTTCTTGACTGGATCTGATAAGGTTGATGATGAGACTGCTTTGTC 747
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 676 CGATGAAGAGCTTATGTTCTTGACTGGATCTGATAAGGTTGATGACGAGACTGCTTTGTC 735
Query 748 TCTGTGGCACTCTAATCTGAAACTTCTCTTGGTCACTCTAGGTGAAAAGGGTTGTAGATA 807
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 736 TCTGTGGCACTCTAATCTGAAACTTCTTTTGGTCACTCTAGGTGATAAGGGTTGTAGATA 795
Query 808 CTACACCAAGAGCTTCCGTGGATCTGTTGATCCCTTCCATGTGGATGCAGTAGATACAAC 867
|||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||||
Sbjct 796 CTACACAAAGAGCTTCCGTGGATCTGTTGATCCTTTCCATGTGAACGCAGTGGATACAAC 855
Query 868 TGGTGCTGGTGATTCATTTGTTGGTGCATTGCTTTGCAAGATTGTTGATGACCGTGCTGT 927
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 856 AGGTGCTGGTGATTCATATGTTGGTGCCTTGCTTTGCAAGATTGTTGATGACCGTGCTGT 915
Query 928 GCTTGAGGACGAAGCTCGGCTGAGAGAAGTGCTTAGGCT-TGCGAATGCTTGTGGAGCCA 986
|||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||
Sbjct 916 GCTTGAGGACGAAGCTCGTCTGAGAGAAGTGCTTAGG-TATGCAAATGCTTGTGGAGCCA 974
Query 987 TCACAACAACAAAGAAAGGAGCTATTCCAGCTCTCCCTACAGAGTCTGAAGTTCAGAGCC 1046
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 975 TCACAACAACAAAGAAAGGAGCAATTCCAGCTCTCCCTACAGAGTCTGAAGTTCAGAGTC 1034
Query 1047 TCCTGAAAGGAAACTGATTT-CACAAT-GTCTGGAtttttaggacttcaagttttacctt 1104
||||||||||||||||||| || ||| |||||||||||||||| |||| |||||| ||
Sbjct 1035 TCCTGAAAGGAAACTGATTAGCA-AATTGTCTGGATTTTTAGGATTTCACGTTTTAGTTT 1093
Query 1105 -ttc-ttggctttgttttttat-tttcccctgcttttGGCTCTGTGTTCTTGTA---GA- 1157
|| |||||||| |||||| | |||| |||||||| |||||||||||||||| ||
Sbjct 1094 CTTTGTTGGCTTTTTTTTTT-TGTTTCTTCTGCTTTTCGCTCTGTGTTCTTGTACCAGAG 1152
Query 1158 A-CCGTTCTATTCTGTTATGAATCTCGTTTTATTCCA 1193
| |||||||||||| ||||||||||||||||||||||
Sbjct 1153 AACCGTTCTATTCTATTATGAATCTCGTTTTATTCCA 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5