BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59490.2
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486415 jgi|Araly1|486415|fgenesh2_kg.5__2407__AT3G59490.1 1382 0.0
> Ahg486415 jgi|Araly1|486415|fgenesh2_kg.5__2407__AT3G59490.1
Length=908
Score = 1382 bits (748), Expect = 0.0
Identities = 867/922 (94%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 59 AGAAGAAGAAAGCTCCAATTTTTCTGCGAATATGGAGGTTCCAAGCTCTGAGGAACTACT 118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGAAAGCTTCAATTTTTCTGCGAATATGGAGGTTCCAAGCTCTGAGGAACTACT 60
Query 119 TCAGTTTCTGAGTTCTTGCCTCTCTCAGATCAAATGGAGACTCAAGAG-CAATTCCAAAC 177
|||||||||||| ||||| |||||||||||||||||| |||||||| | || ||||||||
Sbjct 61 TCAGTTTCTGAGCTCTTGTCTCTCTCAGATCAAATGGCGACTCAAG-GTCACTTCCAAAC 119
Query 178 GCCGTCTCGAAATAGATGTTCTGGCATTATGCACAGGAATGAGACCAGTTGTGATGATTG 237
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 GCCGCCTCGAAATAGATGTTCTGGCATTATGCACGGGAATGAGACCAGTTGTGATGATTG 179
Query 238 ACTATGGTGGAAAGATGCCTGAGCTACAGAATCGTTTGCTGTCACTTCTTGAGCTCATCC 297
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 180 ACTATGGTGGAAAGATGCCTGAGCTACAGAATCGCTTGCTATCACTTCTTGAGCTTATCC 239
Query 298 GAGAGGGTTTACCAGTTTTTAAAGATCTGAAGGTTATGGTTATAGAGGATATGATATACC 357
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GAGAGGGTTTACCAGTTTTCAAAGATCTCAAGGTTATGGTTATAGAGGATATGATATACC 299
Query 358 TCATAAATGTAAGAAGCCTGCCCAAGTTTGTAAGCTCCAGCTTAG-ATTCAGAACCCGAG 416
| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 300 TGATAAATGTAAGAAGACTGCCCAAGTTTGTAAGCTCCAGCTT-GAATTCAGAACCCGAG 358
Query 417 TTGTTCTTCATTGACTTGGAACAAGATCCTCCAAAGATGGTA-ACACAAAGCAAGGAAAG 475
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 359 TTGTTCTTCATCGACTTGGAACAAGATCCTCCAAAGATGGTAGA-ACAAAGCAAGGAAAG 417
Query 476 CAATCTGGGGATGCAGCTTAGATCGATTCAGAAGCTATTCTCTTCGACATTTCCTTTAGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAATCTGGGGATGCAGCTTAGATCGATTCAGAAGCTATTCTCTTCGACATTTCCTTTAGA 477
Query 536 TGACAGCAATACTGATACCACTACGGTACTTGATGAGGCCAACTCTTCTCAGACTTCTTT 595
|||||||||||||| | ||||||| | |||| |||||||||||||||||||| |||||||
Sbjct 478 TGACAGCAATACTGGTTCCACTACAGCACTTAATGAGGCCAACTCTTCTCAGTCTTCTTT 537
Query 596 ATGCATTGATCTTAGCTGTTGTTTACAAGACACTAAAGTTACAATCCCAACCTTAAACGG 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGCATTGATCTTAGTTGTTGTTTACAAGACACTAAAGTTACAATCCCAACCTTAAACGG 597
Query 656 ATGGCTGCTGGACTATCCAGTTGTGTATCTATTTGGCACAGATCACATAGAAGAAGCAAT 715
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 598 ATGGCTGCTGGACTATCCAGTTGTGTATCTATTCGGCACAGACCACATAGAAGAAGCAAT 657
Query 716 CTACAACCTATCCACCAAATCCCTCCGCCTATTCAAAGTTCTAGTATGCAGGAATGGTAC 775
|||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||| |||
Sbjct 658 CTACAACCTATCTACCAAATCCCTTCGCATATTCAAAGTTCTAGTATGCAGTAATGCTAC 717
Query 776 CACCGAGAAGGACTCTCATTTAGAAGAGCTAACAAGTTTTTCAGTGCCATATGATCTGAG 835
||||||| | ||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 718 CACCGAG--G-ACTCTCACTTAGAAGAGCTAACAAGT------G--CCATATGATCTGAG 766
Query 836 TATGGAAGGTAGCAAGGAAGTGTGGGCTGAAAAATTTCTGGAGAGGATGAGTTCAAGGTG 895
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 767 TATGGAAGGTAGCAAGGAAGTGTGGGCTGAAACATTTCTAGAGAGGATGAGTTCGAGGTG 826
Query 896 GGAAGAATGCAAACACATTTGGAGATCATTAGATTTGCAAGTTTCTGAATGTTATCCTCA 955
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 827 GGAAGAATGCAAACACATTTGGAGATCATTGGATTTACAAGTTTCGGAATGTTATCCTCA 886
Query 956 AGCAATTGTGCTTTGAGGCTTT 977
||||||||| |||| |||||||
Sbjct 887 AGCAATTGTTCTTTAAGGCTTT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5