BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59500.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349013 jgi|Araly1|349013|fgenesh1_pg.C_scaffold_5002405 1336 0.0
> Ahg349013 jgi|Araly1|349013|fgenesh1_pg.C_scaffold_5002405
Length=798
Score = 1336 bits (723), Expect = 0.0
Identities = 774/799 (97%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 117 ATGGGACCCCGGCCTGGAATGGCAATGCCTCAGGCAAATCCTCAGCCTAGCCCATTTGGG 176
|||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGGACCCCAGCCTGGAATGCCAATGCCTCAGGTTAATCCTCAGCCTAGCCCGTTTGGG 60
Query 177 AATCCGTTCTCTGGACCTGGCTCTGGACTTATCCGGAGTGGCTTGGGAGCTTATGGGGAG 236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AATCCGTTCTCTGGACCTGGCTCTGGACTTATCCGGAGTGGCTTGGGTGCTTATGGGGAG 120
Query 237 AAGATTTTCGGTTCTAGCTCTGAGTATGTGCAGAGCAACATAAGTCGCTACTTCTCCGAT 296
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGATTTTCGGATCTAGCTCTGAGTATGTGCAGAGCAACATAAGTCGCTACTTCTCCGAT 180
Query 297 CCTCAATACTATTTTCAAGTGAATGACCAGTATGTGAGGAACAAGTTGAAGATTGTTCTA 356
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 181 CCCCAATACTATTTTCAAGTGAATGACCAATATGTAAGGAACAAGTTGAAGATTGTTCTA 240
Query 357 CTTCCATTCCTTCACAGGGGACACTGGACTCGAATATCAGAACCAGTTGGGGGTAGACTT 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CTTCCATTCCTTCACAGGGGACACTGGACTAGAATATCAGAACCAGTTGGGGGTAGACTT 300
Query 417 TCATACAAACCACCGATATACGATATAAATGCACCAGACTTATACATTCCGCTTATGGCC 476
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCATACAAACCCCCGATATACGACATAAATGCACCAGACTTATACATTCCGCTTATGGCC 360
Query 477 TTTGGCACTTACGTTGTTCTTGCTGGTTTGTCACTAGGACTCTATGGAAAGTTTACTCCA 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTTGGCACTTACGTTGTTCTTGCTGGTTTGTCACTAGGACTCTATGGGAAGTTTACTCCA 420
Query 537 GAAGCTCTGAACTGGCTTTTTGTGAAAGGAATGGTTGGCTGGTTTTTGCAAGTGATGCTG 596
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GAAGCTCTCAATTGGCTTTTTGTGAAAGGAATGGTTGGCTGGTTTTTGCAAGTCATGCTG 480
Query 597 CTGAAGATAACATTGCTTTCACTTGGAAGCGGAGAAGC-CCCTCTCTTGGATATTGTGGC 655
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 481 CTGAAGATAACATTGCTTTCACTTGGAAGCGGAGAAGCACCC-CTCTTGGATATTGTGGC 539
Query 656 ATATGCAGGCTATACTTTCACAGGCCTTTGTCTAGCTGTTCTTGGCAAGATAATCTGGGG 715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATATGCAGGCTATACTTTCACGGGCCTTTGTCTAGCTGTTCTTGGCAAGATAATCTGGGG 599
Query 716 ATACTCTTACTATGTTTTGATTCCGTGGACCTGCTTATGCACTGGGGTATTCTTAGTGAA 775
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 600 ATACTCTTACTATGTTTTGATTCCGTGGACCTGCTTATGCACCGGGGTTTTCTTAGTGAA 659
Query 776 GACAATGAAGCGAGTTCTCTTTGCAGAATCTAGGAGTTATGACTCAAGCAGGCATCACTA 835
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 GACAATGAAGCGAGTTCTCTTTGCAGAAGCTAGGAGTTATGACTCAAGCAGGCATCACTA 719
Query 836 TCTCTTGATCTTTGTTGCTTTAGCCCAGTTTCCTCTTTTGATCTGGCTTGGTAACATTAG 895
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCTCTTGATCTTTGTGGCTTTAGCCCAGTTTCCTCTTTTGATCTGGCTTGGTAACATTAG 779
Query 896 TGTGAATTGGCTCTTTTGA 914
|||||||||||||||||||
Sbjct 780 TGTGAATTGGCTCTTTTGA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5