BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59510.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938968 jgi|Araly1|938968|scaffold_503159.1 2012 0.0
> Ahg938968 jgi|Araly1|938968|scaffold_503159.1
Length=1293
Score = 2012 bits (1089), Expect = 0.0
Identities = 1184/1231 (96%), Gaps = 2/1231 (0%)
Strand=Plus/Plus
Query 31 tctgcttcttcttccttagtattcatcatgtccttgttctttctacttctttcacttATT 90
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 44 TCTTCTTCTTCTTCCTTAGTACTCATCATGTCCTTGTTCTTACTACTTCTTTCACTTATT 103
Query 91 GTCCCTTCATCAGTTCTATCAGCCACTCTTCGATCTGATATTCAAGCTCTAGAGTCTATA 150
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 104 GTCCCTTCATCAGTTCTCTCAGCCACTCTTCGATCCGATATTCAAGCTTTAGAGTCTATA 163
Query 151 ATACGCAGCGTTGATCCAAGTTCCATCTCTCCATCCTCTTACCTCAGCACATGGGACTTC 210
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 164 ATACGCAGCGTTGATCCAAGTTCCATCTCCCCATCCTCTTACCTCAGCACATGGGACTTC 223
Query 211 TCTGAAGACCCGTGTGAAGGCTCAGGGACGTTCTTGGGAGTTATGTGTTCTTTCCCTCTG 270
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 224 TCTGAAGACCCATGTGAAGGGGCAGGGACGTTCTTGGGAGTTATGTGTTCTTTCCCTCTG 283
Query 271 GAGAACACAACTAGCCGGGTTATAGAGATCGATCTTGATGATGACGGTTATGACGGTTTC 330
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GAGAACACGACGAGCAGGGTTATAGAGATCGATCTTGATGATGACGGTTATGACGGTTTC 343
Query 331 CTCTCTGATGAAGTAGGAAACCTAACTGAGCTCACTGTCCTTAGCCTCAACAAAAACAGA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 344 CTCTCTGATGAAGTAGGAAACCTAACTGAGCTCACTGTCCTTAGCCTCAACAAGAACAGG 403
Query 391 TTCCGCGGTCCAGTACCAGAATCTGTGTTCCAGCTCCGGAAACTTACCAAACTCTCACTA 450
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||
Sbjct 404 TTCCGCGGTCCAGTACCAGAAACTGTGTTCCAGCTCAGGAAACTCACCAAACTCTCTCTA 463
Query 451 GCAGAAAATTTCTTCACTGGAGACATA-CCAGCAGAAATCACGCGGCTCAAGGAGCTCAA 509
|| || ||||||||||| ||||||||| || || ||||||||||||||||||||||||||
Sbjct 464 GCGGAGAATTTCTTCACCGGAGACATATCC-GCGGAAATCACGCGGCTCAAGGAGCTCAA 522
Query 510 AACCATCGACCTGTCGAAAAACAGTATCGCCGGTGAAATCCCTCCAAGGATCTCAGCCTT 569
|||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 523 AACCATAGACTTGTCCAAAAACAGTATCGCCGGCGAAATCCCGCCAAGGATCTCAGCCTT 582
Query 570 GAGAAGTTTGACTCACCTGGTCCTATCAAACAACCATCTCGATGGAAGAATACCTGCGCT 629
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGAAGTTTGACTCACCTGATCCTATCAAACAACCATCTCGATGGAAGAATACCTGCGCT 642
Query 630 CAACGGCTTGTGGAAGCTACAAGTATTAGAACTCGGTAACAATCATCTTTATGGAATGCT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CAACGGCTTGTGGAAGCTACAAGTATTAGAACTCGGTAACAATCATCTTTATGGAATGCT 702
Query 690 TCCTAAGCTTCCCCCAAGTCTAAGAACTCTATCACTCTGTTTCAATAGCCTTGCAGGACG 749
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 703 TCCTAAGCTTCCCCCAAGTCTAAGAACTCTATCACTATGTTTCAATAGCCTTGGAGGACG 762
Query 750 TATATCACCCTTGCATAGGCTAAAACAGCTTGTGTCTTTAGATGTGAGCCAGAACAGATT 809
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 763 TATATCGCCCTTGCATAGGCTGAAACAGCTTGTGTCATTAGATGTGAGCCAGAACAGATT 822
Query 810 CTCAGGCACCGTTGGCCATGAAATCCTAACATTCCCTGAGATTGCACGCATCAATGTGTC 869
|||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 823 CTCAGGAACCGTTGGCCATGAAATCCTAACATTCCCTGAAATTTCTCGCATCAATGTGTC 882
Query 870 TTTTAACCAGTTCATATCCATAGAGGTTATTAAAGTTACAGGATCACGCCTGCGCATGCT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTTTAACCAGTTCATATCCATAGAGGTTATTAAAGTTACAGGATCACGCCTGCGCATGCT 942
Query 930 TGATGCTGAAGGAAACCATTTACAGGGGCACCTTCCGCTGAACCTGGCAACTTATGAAAA 989
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 943 TGATGCTGAAGGAAACCATTTACAGGGTCACCTTCCGCTGAACCTGGCAACTTATGAAAA 1002
Query 990 CCTAAAGGATATCAATCTACGGAGCAACATGTTCTCTGGCGATATTCCTAGGATTTATGG 1049
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1003 CCTAAAGGATATCAATCTACGAAGCAACATGTTCTCTGGCGATATTCCTAGAATTTATGG 1062
Query 1050 GAAAAGACTGGAGAATTCATGGAGAAGCTTATACTTGGAGAACAACTACCTGTCAGGTAT 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GAAAAGACTGGAGAATTCATGGAGAAGCTTATACTTGGAGAACAACTACCTGTCAGGTAC 1122
Query 1110 ACTTCCTGAGGAGTTTCAAAAGATTACCAAACAGATCAGAGGAAACCTATCGAACAACTG 1169
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1123 ACTTCCTGAGGAGTTTCAAAAGATTTCCAAACAGATCAGAGGAAACCTATCGAATAACTG 1182
Query 1170 TCTGCAATGTCCTAAGAATGTTCAAATCTGCCAAGGAACACAAAAGCCAAAATCACAATG 1229
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TCTGCAATGTCCCAAGAATGTTCAAATCTGCCAAGGAACACAAAAGCCAAAATCACAATG 1242
Query 1230 CACCAATGCAATGCTGGGGAGCTTGGAGTAG 1260
|||||||||||||||||||||||||||||||
Sbjct 1243 CACCAATGCAATGCTGGGGAGCTTGGAGTAG 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5