BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59520.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486418 jgi|Araly1|486418|fgenesh2_kg.5__2410__AT3G59520.1 1476 0.0
> Ahg486418 jgi|Araly1|486418|fgenesh2_kg.5__2410__AT3G59520.1
Length=1336
Score = 1476 bits (799), Expect = 0.0
Identities = 986/1069 (92%), Gaps = 42/1069 (4%)
Strand=Plus/Plus
Query 1 CTGGAACAAGTTAGCGCGAACACGACGAATCGAATCAGAGTCCCAAGGAAGAAAAGATCT 60
||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| | |
Sbjct 1 CTGGAACAAGTTAGCGCGAACACGAAGAATCGAATCA-ATTCCCGAGGAAGAAAAGTTGT 59
Query 61 CTCTTTCATCCTTCTGGAGAATTCATATACTTTGGTCGATTGGTTTTAGCTGAAAAGGTC 120
|||||| |||||||| | | |||||||||||| ||||||||||||| ||||
Sbjct 60 CTCTTTTATCCTTCT-G-G-------ATACTTTGGTCG-GTGGTTTTAGCTGAGAAGG-- 107
Query 121 TCTGCTTTGAGACTAATTCTCAGATCTGTGTATTGCTTGCTTGCATCGCTTTCTACCTCA 180
|| | | | | || | || | | | ||| | | | | || || || | |
Sbjct 108 TC-AC--T--G-C---TT-TGAG-T-T-T-AATT-C-T-C-AG-AT--CTGTC-A----A 141
Query 181 TTGTCGATTTGGAGGAGGGAATTGAGCATTGGGTTTAGCTTCTTAAGTATGGGAAGACCT 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTGCCGATTTGGAGGAGGGAATTGAGCATTGGGTTTAGCTTCTTAAGTATGGGAAGACCC 201
Query 241 TTGTTTTATGATATCATTGAGAAACCAGCAACGAGCTGTATCGTAACGTTATGCAGTGTG 300
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 202 TTGTTTTACGATATCATTGAGAAACCAGCAACGAGCTGCATCGTAACGATATGCAGTGTA 261
Query 301 ATTTGGTTTGTGATTCAGAAGAAGAGTATTGGGTACTCTCAAGTTGGATTGAGTTACGAG 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ATCTGGTTTGTGATTCAGAAGAAGAGTATTGGGTACTCTCAAGTTGGATTGAGTTACGAG 321
Query 361 ACTGCAATCGAAGGGCATTACTGGAGGATGATTACATCTGCTTTATCACATATTAGTGTC 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 322 ACTGCAATCGAAGGGCATTACTGGAGGATGATTACCTCTGCTTTATCACATATTAGCGTC 381
Query 421 TTGCATCTTGTGTTTAACATGAGTGCTTTATGGAGTCTTGGTGTTGTTGAACAGCTAGGT 480
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 382 TTGCATCTTGTGTTTAATATGAGTGCTTTATGGAGTCTTGGTGTTGTGGAACAGCTAGGT 441
Query 481 CATGTAGGTCTTGGCACTGCTTATTACCTTCATTACACTCTTGTTCTTGTTGTGTTCTCT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CATGTTGGTCTTGGCACTGCTTATTACCTTCATTACACTCTTGTTCTTGTTGTGTTCTCT 501
Query 541 GGTGTTTTGGTTATTGGGATCTATCATTTGTTGATTGCTAGATTCAAGATTGATTATTTT 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 502 GGTGTTTTGGTTATTGGGATCTACCATTTGTTGATTGCTAGATTCAAGATTGATTATTTC 561
Query 601 CGGCGAGTTACAGCTGTTGGTTACTCTTGTGTTGTCTTTGGTTGGATGACGATTCTCTCT 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CGGAGAGTTACAGCTGTTGGTTACTCTTGTGTTGTCTTTGGTTGGATGACGATTCTCTCT 621
Query 661 GTTAAGCAACCTTCTTCAAAGCTGAATCTTTTTGGGCTT-TTGTCTCTTCCCATTAGCTT 719
| ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 622 ATGAAGCAACCTTCTTCAAAGCTGGATCTTTTTGGGCTTCTT-TCTCTTCCCATTAGCTT 680
Query 720 TGCGCCATTCGAGTCACTCATTTTCACTTCGATCATTGTTCCACAAGCTAGTTTTCTGGG 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 681 TGCGCCATTCGAGTCACTCATTTTCACTTCGATTATTGTTCCACAAGCTAGTTTTCTGGG 740
Query 780 ACATTTGTCGGGAATCCTTGTTGGTTACGCCATTTCGTGGGGTCTGATTGGTGGGATGAA 839
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 741 ACATTTGTCGGGAATCCTGGTTGGTTACGCCATTTCGTGGGGTTTGATTGGCGGGATGAA 800
Query 840 CAACTACTGGGCTCTTACTATGCTTGGTTGGATTGTAGTTGTCTTTGTGTTCAGTTTGAA 899
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 801 CAACTACTGGGCTCTTACAATGCTTGGTTGGATCGTAGTTGTCTTTGTTTTCAGTTTGAA 860
Query 900 GAAATCGGGTGCTTATGATTTCAGTTTTTTGGAGATCGAATCGCTTACTGATGCTTCTTT 959
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 861 GAAATCGGGTGCTTATGATTTCAGTTTTTTGGAGATCGAATCGCTTAGTGATGCTTCTTT 920
Query 960 ACCCTCAGTGCGGTTTATTGGAAATGGCCGGACCTTGCAAGCCAGTGCAGTTCCTCTTAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ACCCTCAGTGCGGTTTATTGGAAATGGCCGGACCTTGCAAGCCAGTGCAGTTCCTCTTAG 980
Query 1020 TGGAGTGGAAGTTGTCTGAATTCAGTTCATGGTCAATATTGTATTTGGG 1068
||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 981 CGGAGTGGAAGTTGTCTGAATTTAGTTCATGGTCA-TATTGTATTTGGG 1028
Score = 318 bits (172), Expect = 6e-86
Identities = 241/271 (89%), Gaps = 18/271 (7%)
Strand=Plus/Plus
Query 1136 AGTTCCAACCAAATTTAAGAGATCCTCAAGGCTTGCTTGAACTGCGTAATGTGGTGA--- 1192
||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1048 AGTTCCAACCAAATTTAAGCGCTCCTCAAGGCTTGCTTGAACTGCATAATGTGGTGATTG 1107
Query 1193 --AAAGGA-------T-TAAGCAAGCTAGTGTTGTTTAGGCATCATTACAGATGAATATG 1242
||||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1108 GGGAAGGATTCCTCGTCTAATCAAGCTAGTGTTGTTTAGGCATCATTACAGATGAATGTG 1167
Query 1243 ACACAGTCAATTCTTTTGTCATGTGGTTGATGTATAGTTGCAAAAGGGTCCCATGTCTTA 1302
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1168 ACACAGTCAATTATTTTGTCATGTGATTGATGTATAGTTGCGAAAGGGTCCCATGTCTTA 1227
Query 1303 CCTAAAGATTCCGTCCACTAGACATGTTTCCTCATTTGTGA-CATTCTCC-TTTATTTCA 1360
|||||||||||| |||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct 1228 CCTAAAGATTCCATCCACTAGACATGTTTCCTCATTTGTGAGC-TTC-CCATTTATTTCA 1285
Query 1361 ATACGAAAGCATGCTACCAACAGTCTTGTAT 1391
|| ||||||||||||||||||||||| |||
Sbjct 1286 -TATGAAAGCATGCTACCAACAGTCTTATAT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5