BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59530.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938970 jgi|Araly1|938970|scaffold_503161.1 1954 0.0
> Ahg938970 jgi|Araly1|938970|scaffold_503161.1
Length=1282
Score = 1954 bits (1058), Expect = 0.0
Identities = 1130/1166 (97%), Gaps = 0/1166 (0%)
Strand=Plus/Plus
Query 130 CCACCTCTAAGCACTTTTAAATGGAGAAGAAAGGCCAGCATGGTACATATGAATCAATGA 189
||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 1 CCACCTCTAAGCACTTTCAAATGGAGAAGAAAGGCCAGTATGGTACATATGACTCATTGG 60
Query 190 TGACTCATCATCCGATCCTCTGTATCATTGCTTTATCTGTACTTTTCATAGCAATCGACC 249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TGACTCATCATCCGATCCTCTGTATCATTGCTTTATCTGTAATTTTCATAGCAATCGACC 120
Query 250 CCTTTCACATGAGTCCAATCGGGGGTCGTGAGTTCAAACCCGTGAAGCATGAGGTTGCTC 309
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTTCACATGAGTCCAATTGGGGGTCGTGAGTTCAAACCCGTGAAGCATGAGGTTGCTC 180
Query 310 CATATAAGGAAGTCATGGGAAGCTGGCCTAGAGACAACCTTAGTCGACTGGGTAATCATG 369
|||| ||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CATACAAGCAAGTTATGGAAAGCTGGCCAAGAGACAACCTTAGTCGACTGGGTAATCATG 240
Query 370 GGAAACTGGAGTTCGTGGACCAAGTCTTTGGTCCAGAGTCATTAGAGTTTGATAGTTTAG 429
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAAACTGGAGTTTGTGGACCAAGTCTTTGGTCCAGAGTCATTAGAGTTTGATAGTTTAG 300
Query 430 GTCGTGGTCCATACACAGGGTTGGCTGATGGAAGAGTGGTTAGATGGATGGGTGAAGCAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCGTGGTCCATACACAGGGTTGGCTGATGGAAGAGTGGTTAGATGGATGGGTGAAGCAA 360
Query 490 TCGGATGGGAGACATTTTCGGTGGTAACATCAAAATGGTCAGAGGAAGCTTGTGTGAGAG 549
| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 361 TTGGATGGGAGACATTTTCCGTGGTAACATCAAATTGGTCAGAGAAAGCTTGTGTGAGAG 420
Query 550 GTGTGGATTCAACAACAAACAAGCAATGGAAGCACGAGAAGCTGTGTGGGAGGCCTCTTG 609
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 GTGTGGATTCAACAACAAACAAGCAATGGAAGCACGAGAAGCTGTGTGGGAGACCTCTTG 480
Query 610 GACTGAGATTTCATAAAGAGACAGGAAATTTGTATATTGCAGACGCTTACTATGGTCTAC 669
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GTCTGAGATTTCATAAAGAGACAGGAAATTTGTATATTGCAGACGCTTACTATGGTCTGC 540
Query 670 TTGTGGTTGGTCCTGAAGGAGGGATTGCTACGCCTTTAGCTACTCATGTGGAAGGAAAGC 729
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 TTGTGGTTGGTCCTGAAGGAGGGATCGCTACGCCTTTAGCTACTCATGTGGAAGGAAAGC 600
Query 730 CTATACTCTTTGCCAATGACCTTGACATCCATAGAAATGGCTCCATCTTCTTCACTGACA 789
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTATACTATTTGCCAATGACCTTGACATCCATAGAAATGGCTCCATCTTCTTCACTGACA 660
Query 790 CCAGCAAAAGATATGACAGAGCGAATCATTTCTTTATATTACTGGAAGGAGAATCAACAG 849
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 CCAGCAAAAGATATGACAGAGCGAATCATTTCTTTATCTTACTGGAAGGAGAATCAACAG 720
Query 850 GAAGGCTTCTAAGATATGACCCACCTACCAAAACAACACACATTGTGCTGGAGGGTTTGG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGGCTTCTAAGATATGACCCACCTACCAAAACAACACACATTGTGCTGGAGGGTTTGG 780
Query 910 CTTTTCCCAATGGAATTCAACTCTCTAAAGACCAATCTTTCCTCCTCTTCACCGAAACAA 969
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 CTTTTCCCAATGGAATTCAACTCTCTAAAGACCAATCTTTCCTTCTCTTCACCGAAACAA 840
Query 970 CCAATTGCAGATTGGTGAAGTACTGGCTGGAGGGTCCAAAGATGGGTGAAGTCGAGGTGG 1029
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 841 CCAATTGCAGATTGGTGAAATACTGGCTGGAGGGTCCAAAGACAGGTGAAGTCGAGGTGG 900
Query 1030 TGGCAGATCTCCCGGGATTCCCAGACAATGTAAGAATAAATGAAGAGGGTCAGTTTTGGG 1089
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 901 TGGCAGATCTCCCGGGATTCCCAGACAATGTAAGAATAAACGAAAAGGGTCAGTTTTGGG 960
Query 1090 TTGCAATTGATTGTTGCAGAACACCGGCACAAGAGGTTCTTACAAACAACCCTTGGATAA 1149
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCAATAGACTGTTGCAGAACACCGGCACAAGAGGTTCTTACAAACAACCCTTGGATAA 1020
Query 1150 GAAGCATCTACTTTCGGTTGCCAATACCGATGAAGCTGCTTGCGAAAACGATGGGGATGA 1209
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 AAAGCATCTACTTTCGGTTGCCAATACCGATGAAGCTGCTGGCGAAAACGATGGGGATGA 1080
Query 1210 GAATGTACACTGTGATATCGAGATTCGACGAGGAAGGTAAAGTCCTGGAGGTGCTCGAGG 1269
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1081 GAATGTACACTGTGATATCGAGATTCGACGAGGAAGGTAAGGTCTTGGAGGTGCTTGAGG 1140
Query 1270 ATAGACAAGGGAAGGTAATGAAGCTT 1295
||||||||||||||||||||||||||
Sbjct 1141 ATAGACAAGGGAAGGTAATGAAGCTT 1166
Score = 124 bits (67), Expect = 1e-27
Identities = 85/93 (91%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 1289 GAAGCTTTGGATTGGAACAGTGGCTCATAACCACATTGCCACTCTACCTTATCCTTTGAC 1348
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1193 GAAGCTTTGGATTGGAACAGTGGCTCATAACCACATTGCCACTTTACCTTATCCTTTGGC 1252
Query 1349 AATGAATCAATGAAGGAC-TTTGTTGTGTAGTT 1380
|||||||||||| || |||| |||||||||
Sbjct 1253 ---GAATCAATGAAGAACCTTTGCTGTGTAGTT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5