BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59540.1

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1         588    1e-167


> Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1
Length=470

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 348/362 (96%), Gaps = 4/362 (1%)
 Strand=Plus/Plus

Query  1    AGGTTTCTCTATTTCTTTCAGACGCTGGGTTCTTG-CTTTTGCTGTTTGTTCTCTTGAGT  59
            ||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  1    AGGGTTCTCTATTTCTTCCAGACGCTGGGTTC-TGCCTTTTGCTGTTTGTTCTCTTGAGT  59

Query  60   GGAAGAAAGTTGCAGCCACTA-AATCAGATCCGACAATGCCGAAGCAAATCCATGAGATC  118
            ||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||
Sbjct  60   GGAAGAAAGTTGCAGCCAC-ATAACCAGATCCGACAATGCCGAAGCAAATCCATGAAATC  118

Query  119  AAGGACTTCCTTTTGACGGCGAGAAGGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGC  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  AAGGACTTCCTTTTGACGGCGAGAAGGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGC  178

Query  179  AAGGACATTGTGAAGTTCAAGGTCAGGTGCTCAAGGTACCTCTACACACTATGTGTCTTC  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  AAGGACATTGTGAAGTTCAAGGTCAGGTGCTCAAGGTACCTCTACACACTATGTGTCTTC  238

Query  239  GACCAAGAGAAGGCCGATAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGAC  298
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  GACCAAGAGAAGGCTGATAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGAC  298

Query  299  CTTTGAAGATCTTATGAAATCAGGATCTATCATGGTTTTATATACCCTTGTCTTAGATGA  358
            ||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||| ||||
Sbjct  299  CTTTGAAGATCTTTTGAAATTGGGATCTATCATGGTTTTATATACCCTTCTCTTATATGA  358

Query  359  TT  360
            ||
Sbjct  359  TT  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19077794500


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5