BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59550.1
Length=2472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486422 jgi|Araly1|486422|fgenesh2_kg.5__2414__AT3G59550.1 3350 0.0
Ahg943312 jgi|Araly1|943312|scaffold_603856.1 885 0.0
> Ahg486422 jgi|Araly1|486422|fgenesh2_kg.5__2414__AT3G59550.1
Length=2426
Score = 3350 bits (1814), Expect = 0.0
Identities = 2230/2420 (92%), Gaps = 71/2420 (3%)
Strand=Plus/Plus
Query 25 TCTCCAAAAGCACACAAAACCCT-ACCGCTTCG----TCTCTCTCTCT-T-TC--GCTCT 75
|||||||||||||| ||| |||| ||| ||||| ||||||||||| | || |||||
Sbjct 1 TCTCCAAAAGCACATAAAGCCCTAACCTCTTCGTCTCTCTCTCTCTCTCTCTCTTGCTCT 60
Query 76 GCAGTTTCCTATTCAAAATTGATTGGTTTCTCTAAA-TA-ATGTAA-CACCTTCGATTCG 132
|||||||| ||||| ||||||||||||||||||||| || || ||| ||||||||||||
Sbjct 61 GCAGTTTCGTATTCGAAATTGATTGGTTTCTCTAAATTATATATAATTACCTTCGATTCG 120
Query 133 ATAATCCTTCTCTCTCAAATCAACTTCAGTATCTCCATCTCTGCTTCTTTAGGGCTCCTT 192
|||| | | || | | || ||| |||||||||||||||||||||||||
Sbjct 121 ATAA-----C-C-CT----T---C-TC----TCT-CATCTCTGCTTCTTTAGGGCTCCTT 160
Query 193 GTTCGAAGGAATTAAAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 252
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GTTCGAAGGAATT-AAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 219
Query 253 GACGGTGTGGTGCGCCGCTCATGTGCACCAACGCCTCAAGAAGTCTCAGTACACCTCCAT 312
|||||||||||| |||||||||||||| || |||||||||||||||||||||||| || |
Sbjct 220 GACGGTGTGGTGTGCCGCTCATGTGCAACATCGCCTCAAGAAGTCTCAGTACACCGCCGT 279
Query 313 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGTACCATTGGCATTGAGAAC 372
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 280 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGCACCATTGGCATTGAGATT 339
Query 373 GTCAAGTCACCTTCTAGTTGGGGTAGTGCGAATATATTCAAAGAAAGTGGATTATCTTTA 432
|||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 340 GTCAGGTCACCTTCTATTTGGGGTTGTGCGAATATATTCAAAGAAAGTCGATTATCTTTA 399
Query 433 CAATGACTGGAATCTCCTTAATACTTGGGTAGCTAAGGCTTTCGTTTCTACTCAAGTTAA 492
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 400 CAATGACTGGAATCTCCTTAATACTTGGGTCGCTAAGGCTTTCGTTTCTTCTCAAGTTAA 459
Query 493 CTTGCCTGAGGATGCCAGACAGGCCCCGCCTGAGTCTGTTACTTTGCCTCAAGCACTAAA 552
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 460 CTTGCCTGAGGATGCGAGACAGGCGCCGCCTGAGTCTGTGACTTTGCCTCAAGCACTAAA 519
Query 553 TCTGGACGAGTTCGACTTGGAAGATGACACTCTCGACATGGAATTCGATAATCATACTCG 612
| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 520 TTTGGATGAGTTCGACTTGGAAGATGACAGACTCGACATGGAATTCGATAATCATACTCG 579
Query 613 GAGTGAGGAAGATATCACTCTCACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 672
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 580 GAGTGAGGAAGATATTACTCTAACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 639
Query 673 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 699
Query 733 AGAACCTGTGAGTAGGCATACCGGAGAAATTGATGTTGAAACGGCTCATGAGACAGGACC 792
||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 700 AGAACCTGTGAGTGGGCATAACGGAGAAACTGATGTTGAAACGGCTCATGAGGCAGGACC 759
Query 793 AGACAATGAGCCAAGAGACTCCAATATTGCTTTCGATACTGGAACCTATAGTCCTCGTAA 852
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 760 AGACAATGAGCCAAGAGACTCCAATATTGCTTTTGATACTGGAACCTATAGTCCTCGTAA 819
Query 853 CGTCACAGAGGAATTCACTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGCG 912
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CGTCACAGAGGAATTCCCTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGAT 879
Query 913 CATTCCCAATTCCGAGAGAAACGATGCCACTTCTCCTGGAACTGTTCCCGAGATTGAGAG 972
|| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 880 CAATCCCAATACCGAGAGAAACGATGCCAATTCTCCTGGAAATGTTCCCGAGATTGAGAA 939
Query 973 AATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATTTGCTGCACAACA 1032
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 940 AAGGCGTGACGCTGGGCATGATCTAAGCCCCACTTCCCATCCATCATTTGCTGCAGAACA 999
Query 1033 ACAGGATGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGAATGAGAAGGAACC 1092
|||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1000 ACAGAATATCAGAGTTGAACGCACTGAGTCTTTAGATGAAACTTTGAATGAGAAGGAACC 1059
Query 1093 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCTGCGTTTGAGCT 1152
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1060 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCGGCGTTTGAGCT 1119
Query 1153 TCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTGCAGATTTTGTGCA 1212
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1120 GCGCTCAGGATCTCCAGGTTCTGCTG--G-TTCTGAGGAAGAACGTGCAGATTTTGTGCA 1176
Query 1213 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCAACCACAAAGAAGGGCAAG 1272
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1177 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCCACCACAAAGAAGGAAAAG 1236
Query 1273 GAAGAGGAAGAACTTTGATG-GTGTCACA-GTATTAACCAACAAGAACATAAGTGAAAGG 1330
|||||||||||||||||||| | ||| || ||||||||||||| | ||||||| ||||||
Sbjct 1237 GAAGAGGAAGAACTTTGATGAG-GTC-CATGTATTAACCAACAGGTACATAAGAGAAAGG 1294
Query 1331 CTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCCAAATTAAA- 1389
||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1295 CTTGAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCGAAAGTAAAT 1354
Query 1390 GTTTTGGAGAATGAATAACCAGTCAAGGAAGGATCAAAA-TTTCAATGAGCCCTTGTTTA 1448
|||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1355 GTTT-GGAGAATGAATAACCAGTCAAGGAAGGATCAAAAGTTTGA-TGAGCCCTTGTTTA 1412
Query 1449 CTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGGACTATGTAGCTTCAAAGCCAC 1508
||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 1413 CTGGCTTCTCAGATGTTTTAGGCAGGGTCTTTGAAAAGGACTATGTAGCTTCGAAGCCAT 1472
Query 1509 ATCTTGCTGTTTCTGATGAAACTTTACCAGAACCTGCATCTGTATC-TC-C-TACTCGAG 1565
|||||||||||||||||||||||||||| |||||| |||||||||| || | ||||||||
Sbjct 1473 ATCTTGCTGTTTCTGATGAAACTTTACCTGAACCTTCATCTGTATCATCTCCTACTCGAG 1532
Query 1566 AAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCA-GA-TT--C-T-----A--CTA 1613
|||||||| ||||||||| |||||||||||||||||| || || | | | |||
Sbjct 1533 AAGCTGAAACAGAAATTAACCCGGTCTCTCCAATTCCACGAGTTATCGTTCCTGATTCTA 1592
Query 1614 --A-TCCAGACAGTACAGTTCAGCTATCTCCAGCGCAGCAAACTGAAGATGTCCTAGACT 1670
| ||||||||||||||||||||||||||||| || ||||||||||||| || |||||
Sbjct 1593 CTAATCCAGACAGTACAGTTCAGCTATCTCCAGTTCAACAAACTGAAGATGCCCAAGACT 1652
Query 1671 CTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTCCTCGGA 1730
| |||||||||||||| ||||| |||||||||||||||||||||| |||||||| | ||
Sbjct 1653 TTACAGGTCCTCGACCCACGCATCCAGAGTCTGTAGCAACAGAAGCTCAATCTCCGCAGA 1712
Query 1731 CATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGGTGTACA 1790
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1713 CATTTGATAATGATGACATTGGAATCGAACATTTAAGGGATGGTGGTTTCCCTGTGTACA 1772
Query 1791 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACTCAGTCTG 1850
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1773 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCAATGACTTCACCACTCAGCCTG 1832
Query 1851 GAAATTGGGAGACAGAATCTTATAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1910
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1833 GAACTTGGGAGACAGAATCTTACAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1892
Query 1911 TGCCTGG-CCAAAGAAATTTGGGGCTTTCACCTGTTTCTGAAAGGACTGACGAGGAACTT 1969
||||||| |||| |||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 1893 TGCCTGGACCAA-GAAATTTGGGGCTTTCACCTGTTTCTGAAACGACTAATGAGGAACTT 1951
Query 1970 TATTTCCTGGAGGTAGGTGGCAATTCCCCAGTAGGAACACCAGCTAGTCAAGATTCTGCT 2029
||||||||||||||||| || ||| |||||||||||||||| |||||||||||||| |
Sbjct 1952 TATTTCCTGGAGGTAGGAGGGAATACCCCAGTAGGAACACC---TAGTCAAGATTCTGAT 2008
Query 2030 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAAACAACGTTCTTCAAGTAGT 2089
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2009 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAGACAACGTTCTTCAAGTAGT 2068
Query 2090 CCCACCACATCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2149
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 CCCAC-A--TCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2125
Query 2150 ACACGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2209
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 ACAAGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2185
Query 2210 ATAGATATGCAACAGGACCGACCATACGGAGATATCGCTTTGAAGTTGATGCCTGCCCTT 2269
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2186 ATAGATATGCAACAGGACCGACCCTACGGCGATATCGCTTTGAAGTTGATGCCTGCCCTT 2245
Query 2270 TTTTCTAAGGTTCAAACGTGAATAAACAATGCTTAATAAACTTACTTATGTATATTATTA 2329
||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 2246 TTTTCAAAGGTTCAAACATGAATAAACAATGCTTAGTAGACTTATTTATGTATATTATTA 2305
Query 2330 ACATTGAAGCTAGACGAGGAAGTAGTCAATTCTTAATTTTTTGAGCCCTGGTTTTATTAC 2389
|||||||| ||||||||||||||||| |||||||||| |||| ||||||||| |||||
Sbjct 2306 GCATTGAAGAAAGACGAGGAAGTAGTCA-TTCTTAATTTATTGATCCCTGGTTTGATTAC 2364
Query 2390 ATTGTGTACAAGTAAAGCTT 2409
||| ||| ||||||||||||
Sbjct 2365 ATTTTGTTCAAGTAAAGCTT 2384
> Ahg943312 jgi|Araly1|943312|scaffold_603856.1
Length=2007
Score = 885 bits (479), Expect = 0.0
Identities = 812/966 (84%), Gaps = 49/966 (5%)
Strand=Plus/Plus
Query 961 CGAGATTGAGAGAATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATT 1020
||||||||||| || |||||| ||||||| ||| ||||||| |||| |||||| ||||
Sbjct 515 CGAGATTGAGAAAAGGCGTGATGCTGCACGCGATTTAAGCCCTGCGTCTCATCCACCATT 574
Query 1021 TGCTGCACAACAACAGGA-TGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGA 1079
||||||||||||||| | |||||||||| | || || || |||||| |||||
Sbjct 575 TGCTGCACAACAACA-TAGTGTCAGAGTT----G----GA-TCCTTACATGAAAGTTTGA 624
Query 1080 ATGAGAAGGAACCCACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATT 1139
|||| |||||| ||||||| | || ||||||||||||| ||||||||||| || ||||||
Sbjct 625 ATGATAAGGAAGCCACTATTCATAATATTGATGAAGAAGTGTTAAATTCTAGAGGGCATT 684
Query 1140 CTGCGTTTGAGCTTCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTG 1199
| ||||||| |||||| | |||||||| ||| | |||||||||||||||||||||||
Sbjct 685 CCATGTTTGAGTTTCGCTTAAGATCTCCAAGTT-T--TGCTGGTTCTGAGGAAGAACGTG 741
Query 1200 CAGATTTTGTGCATCCATCACCTCAACTGGTGCTTCAGCC-A-T-CTCCTCCTCCCCA-A 1255
||||||||||||||||||||||| ||||||| || ||||| | | |||||||| |||| |
Sbjct 742 CAGATTTTGTGCATCCATCACCTGAACTGGTTCTGCAGCCAAGTACTCCTCCT-CCCACA 800
Query 1256 CCACAAAGAAGGGCAAGGAAGAGGAAGAACTTTGATGGTGTCAC-A-G---TATTAA-CC 1309
||||||| |||| |||| ||||||||| ||| |||| | | | | | |||||| |
Sbjct 801 CCACAAACAAGGCCAAGAAAGAGGAAGCACTATGAT-AAGAC-CTATGTCTTATTAAGTC 858
Query 1310 AACAAGAACATAAGTGAAAGGCTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAG 1369
|||||| | | || |||||||| ||||||||||| | ||| | |||||||||||||||
Sbjct 859 -ACAAGATCCTGAGAAAAAGGCTTGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAG 917
Query 1370 ATGCCTTCATCCAAATTAAAG-TTTTGGAGA-ATGAATAACCAGTCAAGGAAGGATCAAA 1427
|||||||||| ||| | | | ||||||||| || |||||||||||| ||||||||||
Sbjct 918 TTGCCTTCATCTAAACT-AGGTTTTTGGAGACTTG-ATAACCAGTCAAAGAAGGATCAAC 975
Query 1428 ATTTCAATGAGCCCTTGTTTACTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGG 1487
||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 976 TTTTCAATGAGCCCTTGTTTACTGGCTTCTCAAATGTTTTACGCAGTGTCTTTGAAAAGG 1035
Query 1488 ACTATGTAGCTTCAAAGCCACATCTTGCTGTTTCTGATGAAACT-TTACCAGAACCTGCA 1546
|||||||||||||||| ||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct 1036 ACTATGTAGCTTCAAAACCATATCTTGCTGTTCCTGATGAAACTATT-CCAGAACCTGCA 1094
Query 1547 TCTGTATCTCCTACTCGAGAAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCAGAT 1606
|| |||||| ||||||||||||||| ||||||||| |||| ||||||| |||| |||
Sbjct 1095 TC---ATCTCCAACTCGAGAAGCTGAAACAGAAATTAACCCGGCCTCTCCAGTTCCTGAT 1151
Query 1607 TCTACTAATCCAGACAGTACAGTTCAGCTATCTCCAGCG-CAGCAAACTGAAGATGTCCT 1665
|||||||||| ||||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 1152 TCTACTAATCGAGACAGTACAGTTCAGCGGCCTCCA-CAACAGGAAACTGAAGATGTCCA 1210
Query 1666 AGAC-TCTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTC 1724
|| | | ||||||||||| | |||||| |||||||||||||||| |||||||||||||||
Sbjct 1211 AGGCGT-TGCAGGTCCTCAATCCGCGCGTGCAGAGTCTGTAGCAGCAGAAGCACAATCTC 1269
Query 1725 CTCGGACATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGG 1784
||| | ||| | | || || ||||| | ||| |||||||| |||||||||||||||| |
Sbjct 1270 CTCAGCCATCTAACAATGACGACATAGAAATCGAACATTTCAGGGATGGTGGTTTCCATG 1329
Query 1785 -TGTACATGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACT 1843
| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 1330 AT-TACATGCCGTCACCACCTCCACGATCCTCACCTTTTAGAACCAATGACTTCACCACT 1388
Query 1844 CAGTCTGGAA-A-TTGGGAGACAGAATCTTAT-AGAACAGAGCCTTCAACTTCCACAGTT 1900
||| || || | ||||||||||||||||| | ||||||||| |||||||||||||| |
Sbjct 1389 CAGCCT--AACACTTGGGAGACAGAATCTT-TCAGAACAGAGACTTCAACTTCCACAAAT 1445
Query 1901 CCAGAG 1906
||||||
Sbjct 1446 CCAGAG 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93168739270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5