BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59550.1 Length=2472 Score E Sequences producing significant alignments: (Bits) Value Ahg486422 jgi|Araly1|486422|fgenesh2_kg.5__2414__AT3G59550.1 3350 0.0 Ahg943312 jgi|Araly1|943312|scaffold_603856.1 885 0.0 > Ahg486422 jgi|Araly1|486422|fgenesh2_kg.5__2414__AT3G59550.1 Length=2426 Score = 3350 bits (1814), Expect = 0.0 Identities = 2230/2420 (92%), Gaps = 71/2420 (3%) Strand=Plus/Plus Query 25 TCTCCAAAAGCACACAAAACCCT-ACCGCTTCG----TCTCTCTCTCT-T-TC--GCTCT 75 |||||||||||||| ||| |||| ||| ||||| ||||||||||| | || ||||| Sbjct 1 TCTCCAAAAGCACATAAAGCCCTAACCTCTTCGTCTCTCTCTCTCTCTCTCTCTTGCTCT 60 Query 76 GCAGTTTCCTATTCAAAATTGATTGGTTTCTCTAAA-TA-ATGTAA-CACCTTCGATTCG 132 |||||||| ||||| ||||||||||||||||||||| || || ||| |||||||||||| Sbjct 61 GCAGTTTCGTATTCGAAATTGATTGGTTTCTCTAAATTATATATAATTACCTTCGATTCG 120 Query 133 ATAATCCTTCTCTCTCAAATCAACTTCAGTATCTCCATCTCTGCTTCTTTAGGGCTCCTT 192 |||| | | || | | || ||| ||||||||||||||||||||||||| Sbjct 121 ATAA-----C-C-CT----T---C-TC----TCT-CATCTCTGCTTCTTTAGGGCTCCTT 160 Query 193 GTTCGAAGGAATTAAAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 252 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161 GTTCGAAGGAATT-AAATGTTTTATTCACATACGCTTTTGGCTCGAAAGGGTCCATTGGG 219 Query 253 GACGGTGTGGTGCGCCGCTCATGTGCACCAACGCCTCAAGAAGTCTCAGTACACCTCCAT 312 |||||||||||| |||||||||||||| || |||||||||||||||||||||||| || | Sbjct 220 GACGGTGTGGTGTGCCGCTCATGTGCAACATCGCCTCAAGAAGTCTCAGTACACCGCCGT 279 Query 313 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGTACCATTGGCATTGAGAAC 372 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 280 CAACATCCCCGACACTGTTGATAATATAATGTTTCCTGAAGCACCATTGGCATTGAGATT 339 Query 373 GTCAAGTCACCTTCTAGTTGGGGTAGTGCGAATATATTCAAAGAAAGTGGATTATCTTTA 432 |||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 340 GTCAGGTCACCTTCTATTTGGGGTTGTGCGAATATATTCAAAGAAAGTCGATTATCTTTA 399 Query 433 CAATGACTGGAATCTCCTTAATACTTGGGTAGCTAAGGCTTTCGTTTCTACTCAAGTTAA 492 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 400 CAATGACTGGAATCTCCTTAATACTTGGGTCGCTAAGGCTTTCGTTTCTTCTCAAGTTAA 459 Query 493 CTTGCCTGAGGATGCCAGACAGGCCCCGCCTGAGTCTGTTACTTTGCCTCAAGCACTAAA 552 ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 460 CTTGCCTGAGGATGCGAGACAGGCGCCGCCTGAGTCTGTGACTTTGCCTCAAGCACTAAA 519 Query 553 TCTGGACGAGTTCGACTTGGAAGATGACACTCTCGACATGGAATTCGATAATCATACTCG 612 | |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 520 TTTGGATGAGTTCGACTTGGAAGATGACAGACTCGACATGGAATTCGATAATCATACTCG 579 Query 613 GAGTGAGGAAGATATCACTCTCACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 672 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 580 GAGTGAGGAAGATATTACTCTAACAGATCAAATTCCTACTGGCATTGATCCTTATGTTGC 639 Query 673 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TGTAACATTCGACGAGGACATCATCTCAGAATCTATCCCGATGGATGTCGACCAATCAAC 699 Query 733 AGAACCTGTGAGTAGGCATACCGGAGAAATTGATGTTGAAACGGCTCATGAGACAGGACC 792 ||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||| Sbjct 700 AGAACCTGTGAGTGGGCATAACGGAGAAACTGATGTTGAAACGGCTCATGAGGCAGGACC 759 Query 793 AGACAATGAGCCAAGAGACTCCAATATTGCTTTCGATACTGGAACCTATAGTCCTCGTAA 852 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 760 AGACAATGAGCCAAGAGACTCCAATATTGCTTTTGATACTGGAACCTATAGTCCTCGTAA 819 Query 853 CGTCACAGAGGAATTCACTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGCG 912 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 820 CGTCACAGAGGAATTCCCTGAAGTCCAGGATCCTAGACAAAGTAACTTGACAGAAGAGAT 879 Query 913 CATTCCCAATTCCGAGAGAAACGATGCCACTTCTCCTGGAACTGTTCCCGAGATTGAGAG 972 || ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 880 CAATCCCAATACCGAGAGAAACGATGCCAATTCTCCTGGAAATGTTCCCGAGATTGAGAA 939 Query 973 AATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATTTGCTGCACAACA 1032 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 940 AAGGCGTGACGCTGGGCATGATCTAAGCCCCACTTCCCATCCATCATTTGCTGCAGAACA 999 Query 1033 ACAGGATGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGAATGAGAAGGAACC 1092 |||| || |||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1000 ACAGAATATCAGAGTTGAACGCACTGAGTCTTTAGATGAAACTTTGAATGAGAAGGAACC 1059 Query 1093 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCTGCGTTTGAGCT 1152 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1060 CACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATTCGGCGTTTGAGCT 1119 Query 1153 TCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTGCAGATTTTGTGCA 1212 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1120 GCGCTCAGGATCTCCAGGTTCTGCTG--G-TTCTGAGGAAGAACGTGCAGATTTTGTGCA 1176 Query 1213 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCAACCACAAAGAAGGGCAAG 1272 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1177 TCCATCACCTCAACTGGTGCTTCAGCCATCTCCTCCTCCCCCACCACAAAGAAGGAAAAG 1236 Query 1273 GAAGAGGAAGAACTTTGATG-GTGTCACA-GTATTAACCAACAAGAACATAAGTGAAAGG 1330 |||||||||||||||||||| | ||| || ||||||||||||| | ||||||| |||||| Sbjct 1237 GAAGAGGAAGAACTTTGATGAG-GTC-CATGTATTAACCAACAGGTACATAAGAGAAAGG 1294 Query 1331 CTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCCAAATTAAA- 1389 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1295 CTTGAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAGATGCCTTCATCGAAAGTAAAT 1354 Query 1390 GTTTTGGAGAATGAATAACCAGTCAAGGAAGGATCAAAA-TTTCAATGAGCCCTTGTTTA 1448 |||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct 1355 GTTT-GGAGAATGAATAACCAGTCAAGGAAGGATCAAAAGTTTGA-TGAGCCCTTGTTTA 1412 Query 1449 CTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGGACTATGTAGCTTCAAAGCCAC 1508 ||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| Sbjct 1413 CTGGCTTCTCAGATGTTTTAGGCAGGGTCTTTGAAAAGGACTATGTAGCTTCGAAGCCAT 1472 Query 1509 ATCTTGCTGTTTCTGATGAAACTTTACCAGAACCTGCATCTGTATC-TC-C-TACTCGAG 1565 |||||||||||||||||||||||||||| |||||| |||||||||| || | |||||||| Sbjct 1473 ATCTTGCTGTTTCTGATGAAACTTTACCTGAACCTTCATCTGTATCATCTCCTACTCGAG 1532 Query 1566 AAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCA-GA-TT--C-T-----A--CTA 1613 |||||||| ||||||||| |||||||||||||||||| || || | | | ||| Sbjct 1533 AAGCTGAAACAGAAATTAACCCGGTCTCTCCAATTCCACGAGTTATCGTTCCTGATTCTA 1592 Query 1614 --A-TCCAGACAGTACAGTTCAGCTATCTCCAGCGCAGCAAACTGAAGATGTCCTAGACT 1670 | ||||||||||||||||||||||||||||| || ||||||||||||| || ||||| Sbjct 1593 CTAATCCAGACAGTACAGTTCAGCTATCTCCAGTTCAACAAACTGAAGATGCCCAAGACT 1652 Query 1671 CTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTCCTCGGA 1730 | |||||||||||||| ||||| |||||||||||||||||||||| |||||||| | || Sbjct 1653 TTACAGGTCCTCGACCCACGCATCCAGAGTCTGTAGCAACAGAAGCTCAATCTCCGCAGA 1712 Query 1731 CATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGGTGTACA 1790 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 1713 CATTTGATAATGATGACATTGGAATCGAACATTTAAGGGATGGTGGTTTCCCTGTGTACA 1772 Query 1791 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACTCAGTCTG 1850 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1773 TGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCAATGACTTCACCACTCAGCCTG 1832 Query 1851 GAAATTGGGAGACAGAATCTTATAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1910 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1833 GAACTTGGGAGACAGAATCTTACAGAACAGAGCCTTCAACTTCCACAGTTCCAGAGGACT 1892 Query 1911 TGCCTGG-CCAAAGAAATTTGGGGCTTTCACCTGTTTCTGAAAGGACTGACGAGGAACTT 1969 ||||||| |||| |||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct 1893 TGCCTGGACCAA-GAAATTTGGGGCTTTCACCTGTTTCTGAAACGACTAATGAGGAACTT 1951 Query 1970 TATTTCCTGGAGGTAGGTGGCAATTCCCCAGTAGGAACACCAGCTAGTCAAGATTCTGCT 2029 ||||||||||||||||| || ||| |||||||||||||||| |||||||||||||| | Sbjct 1952 TATTTCCTGGAGGTAGGAGGGAATACCCCAGTAGGAACACC---TAGTCAAGATTCTGAT 2008 Query 2030 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAAACAACGTTCTTCAAGTAGT 2089 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2009 GCTTTGACAGGGAGAGCAAGAGCCTTGGCTCAGTATCTTAGACAACGTTCTTCAAGTAGT 2068 Query 2090 CCCACCACATCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2149 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2069 CCCAC-A--TCAAGCCATCCTTCTGGAGATCTAAGTTTGAGCGAGATCTTGGCAGGAAAG 2125 Query 2150 ACACGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2209 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2126 ACAAGGAAGCTAGCTGCTCGAATGTTCTTCGAGACACTGGTTTTGAAGTCTAGGGGACTT 2185 Query 2210 ATAGATATGCAACAGGACCGACCATACGGAGATATCGCTTTGAAGTTGATGCCTGCCCTT 2269 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 2186 ATAGATATGCAACAGGACCGACCCTACGGCGATATCGCTTTGAAGTTGATGCCTGCCCTT 2245 Query 2270 TTTTCTAAGGTTCAAACGTGAATAAACAATGCTTAATAAACTTACTTATGTATATTATTA 2329 ||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||| Sbjct 2246 TTTTCAAAGGTTCAAACATGAATAAACAATGCTTAGTAGACTTATTTATGTATATTATTA 2305 Query 2330 ACATTGAAGCTAGACGAGGAAGTAGTCAATTCTTAATTTTTTGAGCCCTGGTTTTATTAC 2389 |||||||| ||||||||||||||||| |||||||||| |||| ||||||||| ||||| Sbjct 2306 GCATTGAAGAAAGACGAGGAAGTAGTCA-TTCTTAATTTATTGATCCCTGGTTTGATTAC 2364 Query 2390 ATTGTGTACAAGTAAAGCTT 2409 ||| ||| |||||||||||| Sbjct 2365 ATTTTGTTCAAGTAAAGCTT 2384 > Ahg943312 jgi|Araly1|943312|scaffold_603856.1 Length=2007 Score = 885 bits (479), Expect = 0.0 Identities = 812/966 (84%), Gaps = 49/966 (5%) Strand=Plus/Plus Query 961 CGAGATTGAGAGAATGCGTGACGCTGCACATGATCTAAGCCCCACGTCCCATCCATCATT 1020 ||||||||||| || |||||| ||||||| ||| ||||||| |||| |||||| |||| Sbjct 515 CGAGATTGAGAAAAGGCGTGATGCTGCACGCGATTTAAGCCCTGCGTCTCATCCACCATT 574 Query 1021 TGCTGCACAACAACAGGA-TGTCAGAGTTGAACGCACTGAGTCATTGGATGAAACTTTGA 1079 ||||||||||||||| | |||||||||| | || || || |||||| ||||| Sbjct 575 TGCTGCACAACAACA-TAGTGTCAGAGTT----G----GA-TCCTTACATGAAAGTTTGA 624 Query 1080 ATGAGAAGGAACCCACTATCCCTAGTATTGATGAAGAAATGTTAAATTCTGGAAGGCATT 1139 |||| |||||| ||||||| | || ||||||||||||| ||||||||||| || |||||| Sbjct 625 ATGATAAGGAAGCCACTATTCATAATATTGATGAAGAAGTGTTAAATTCTAGAGGGCATT 684 Query 1140 CTGCGTTTGAGCTTCGCTCAGGATCTCCAGGTTCTGCTGCTGGTTCTGAGGAAGAACGTG 1199 | ||||||| |||||| | |||||||| ||| | ||||||||||||||||||||||| Sbjct 685 CCATGTTTGAGTTTCGCTTAAGATCTCCAAGTT-T--TGCTGGTTCTGAGGAAGAACGTG 741 Query 1200 CAGATTTTGTGCATCCATCACCTCAACTGGTGCTTCAGCC-A-T-CTCCTCCTCCCCA-A 1255 ||||||||||||||||||||||| ||||||| || ||||| | | |||||||| |||| | Sbjct 742 CAGATTTTGTGCATCCATCACCTGAACTGGTTCTGCAGCCAAGTACTCCTCCT-CCCACA 800 Query 1256 CCACAAAGAAGGGCAAGGAAGAGGAAGAACTTTGATGGTGTCAC-A-G---TATTAA-CC 1309 ||||||| |||| |||| ||||||||| ||| |||| | | | | | |||||| | Sbjct 801 CCACAAACAAGGCCAAGAAAGAGGAAGCACTATGAT-AAGAC-CTATGTCTTATTAAGTC 858 Query 1310 AACAAGAACATAAGTGAAAGGCTTAAGGATCCTAGTGATACTCTACGTAAGAGAAAGAAG 1369 |||||| | | || |||||||| ||||||||||| | ||| | ||||||||||||||| Sbjct 859 -ACAAGATCCTGAGAAAAAGGCTTGAGGATCCTAGTAAGACTGTTCGTAAGAGAAAGAAG 917 Query 1370 ATGCCTTCATCCAAATTAAAG-TTTTGGAGA-ATGAATAACCAGTCAAGGAAGGATCAAA 1427 |||||||||| ||| | | | ||||||||| || |||||||||||| |||||||||| Sbjct 918 TTGCCTTCATCTAAACT-AGGTTTTTGGAGACTTG-ATAACCAGTCAAAGAAGGATCAAC 975 Query 1428 ATTTCAATGAGCCCTTGTTTACTGGCTTCTCAGATGATTTACGCAATGTCTTTGAAAAGG 1487 ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct 976 TTTTCAATGAGCCCTTGTTTACTGGCTTCTCAAATGTTTTACGCAGTGTCTTTGAAAAGG 1035 Query 1488 ACTATGTAGCTTCAAAGCCACATCTTGCTGTTTCTGATGAAACT-TTACCAGAACCTGCA 1546 |||||||||||||||| ||| ||||||||||| ||||||||||| || |||||||||||| Sbjct 1036 ACTATGTAGCTTCAAAACCATATCTTGCTGTTCCTGATGAAACTATT-CCAGAACCTGCA 1094 Query 1547 TCTGTATCTCCTACTCGAGAAGCTGAAGTAGAAATTAATCCGGTCTCTCCAATTCCAGAT 1606 || |||||| ||||||||||||||| ||||||||| |||| ||||||| |||| ||| Sbjct 1095 TC---ATCTCCAACTCGAGAAGCTGAAACAGAAATTAACCCGGCCTCTCCAGTTCCTGAT 1151 Query 1607 TCTACTAATCCAGACAGTACAGTTCAGCTATCTCCAGCG-CAGCAAACTGAAGATGTCCT 1665 |||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||||| Sbjct 1152 TCTACTAATCGAGACAGTACAGTTCAGCGGCCTCCA-CAACAGGAAACTGAAGATGTCCA 1210 Query 1666 AGAC-TCTGCAGGTCCTCGACCCGCGCATGCAGAGTCTGTAGCAACAGAAGCACAATCTC 1724 || | | ||||||||||| | |||||| |||||||||||||||| ||||||||||||||| Sbjct 1211 AGGCGT-TGCAGGTCCTCAATCCGCGCGTGCAGAGTCTGTAGCAGCAGAAGCACAATCTC 1269 Query 1725 CTCGGACATTTGATAACGATGACATGGGAATAGAACATTTAAGGGATGGTGGTTTCCCGG 1784 ||| | ||| | | || || ||||| | ||| |||||||| |||||||||||||||| | Sbjct 1270 CTCAGCCATCTAACAATGACGACATAGAAATCGAACATTTCAGGGATGGTGGTTTCCATG 1329 Query 1785 -TGTACATGCCGTCACCACCTCCAAGATCTTCACCTTTTAGAACCGATGACTTCACCACT 1843 | ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| Sbjct 1330 AT-TACATGCCGTCACCACCTCCACGATCCTCACCTTTTAGAACCAATGACTTCACCACT 1388 Query 1844 CAGTCTGGAA-A-TTGGGAGACAGAATCTTAT-AGAACAGAGCCTTCAACTTCCACAGTT 1900 ||| || || | ||||||||||||||||| | ||||||||| |||||||||||||| | Sbjct 1389 CAGCCT--AACACTTGGGAGACAGAATCTT-TCAGAACAGAGACTTCAACTTCCACAAAT 1445 Query 1901 CCAGAG 1906 |||||| Sbjct 1446 CCAGAG 1451 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93168739270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5