BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59570.1
Length=2631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486423 jgi|Araly1|486423|fgenesh2_kg.5__2415__AT3G59570.1 3476 0.0
Ahg935251 jgi|Araly1|935251|scaffold_403239.1 765 0.0
> Ahg486423 jgi|Araly1|486423|fgenesh2_kg.5__2415__AT3G59570.1
Length=2468
Score = 3476 bits (1882), Expect = 0.0
Identities = 2334/2537 (92%), Gaps = 91/2537 (4%)
Strand=Plus/Plus
Query 1 AAATTGACTAATTGAAATGTCAACCTAAATTaaaaagagaaacttttgcgaaacacagaa 60
|||||||||||||||||||||||||||||||||||||| ||||||| ||| || | | ||
Sbjct 1 AAATTGACTAATTGAAATGTCAACCTAAATTAAAAAGATAAACTTTGGCG-AA-A-A-AA 56
Query 61 aaagagaaagagagaaaagGCAGGCAGGGATAAATCAACGGACTTTCCCTGGGAAGAAAA 120
|||| | || ||||||| | | | || | | || ||||||||||||| || |||
Sbjct 57 AAAG-G-CAG-GAGAAAA-G-A---A--GA-AGA--AA--GACTTTCCCTGGG-AGGAAA 100
Query 121 AATGTTCACCGGAGAAGAATGTCCTCCATGATC-T-T-C---TTCTACAGGTTTCTGTAC 174
|||||||||||||||||||||||||||||||| | | | |||| ||||||||| | |
Sbjct 101 GATGTTCACCGGAGAAGAATGTCCTCCATGATCATCTACAGGTTCTCCAGGTTTCTTTGC 160
Query 175 TGCTTTTGGGCTGCT-TTGAGAACGGATGATTCCGTTTGTGAAGGAACAAGTGGGAATTG 233
||||||||||||| | |||||||||||||||||| ||| | |||||| || |||||||||
Sbjct 161 TGCTTTTGGGCTG-TGTTGAGAACGGATGATTCCTTTTCTCAAGGAAGAATTGGGAATTG 219
Query 234 GGGA---GGGAGGGTTGGTGT-T-TGTGTGTTTTGATTACTGATGTTTTCTGCTGGAGAG 288
|||| |||||| ||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 220 GGGAGGGGGGAGGCTTGGTGTGTGTGTGTGTTTTGATTACTGATGTTTTCTGGTGGAGAG 279
Query 289 GGAAAGAAATGGACTCGTCGGAAAGCTGGTCTTGTAAGTCTACAAAAA---GTGGCATCT 345
||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 280 GGAAAGAAATGGACTTGTGGGAAACCTGGTCTTGTAAGTCTACAAAAAGTGGTGGCATCT 339
Query 346 TTGGTTCGGGATCTGAGAGAGCCTTGTCTTTCACAATCTCGCATACAAGTTGTTTTGACT 405
||| ||||||||||||| |||||||||||||||||||| | || ||||||||||| |||
Sbjct 340 TTGCTTCGGGATCTGAGCCAGCCTTGTCTTTCACAATCTGGGATTCAAGTTGTTTTAACT 399
Query 406 ATTGGCAAAATGCTTAAGCCTGAGAAGTGGCAGGCTTTATTCGATGGCGATGGAAAGGTT 465
|| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 400 ATCGGCAAAATGCTTAAGCCTGAGAAATGGCAGGCTTTTTTCGATTGCGATGGAAAGGTT 459
Query 466 TCCAGTTTCCACAAGGCGCTCAAATTAATTATTTTGGGGGGAATCGATCCATCCATAAGA 525
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 460 TCTGGTTTCCACAAGGCGCTCAAATTAATTATTTTGGGGGGAATCGACCCATCTATAAGA 519
Query 526 GCTGAAGTTTGGGAATTTCTCCTTGGCTGTTATGCATTAAGCAGCACCTCTGAGTATCGT 585
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 520 GCTGAAGTTTGGGAATTTCTCCTTGGCTGTTATGCATTGGGCAGCACCTCTGAGTATCGT 579
Query 586 ACGCAACTCAGGGTAGCTCGAAGAGAACGATACAATGAGCTGCTCAAGCAATGCCAGATG 645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGGCAACTCAGGGTAGCTCGAAGAGAACGATACAATGAGCTGCTCAAGCAATGCCAGATG 639
Query 646 ATGCATTCGACTGTGGGAACTGGTTCACTTGCCTATGTTGTCGGATCTAAAGTTATGGAT 705
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 640 ATGCATTCTAGTGTGGGAACTGGTTCACTTGCCTATGTTGTGGGATCTAAAGTTATGGAT 699
Query 706 ATGCGAAAATCATACAAAAATGAGGTAGTAAAGGAGGATATAGATGAAAGCCGGGAAGCT 765
|||||||||||||||||||||||||| |||||||| | |||||||||| || | ||||||
Sbjct 700 ATGCGAAAATCATACAAAAATGAGGTTGTAAAGGAAGCTATAGATGAAGGCAGAGAAGCT 759
Query 766 TGTTTAGATGGGCATGAGAACACTGACA-ATCACGGTGATTGGAGTAATAATGATACTGA 824
||||||||||| ||||||||||||| | ||||| ||||||||||||||||||| || |
Sbjct 760 TGTTTAGATGGTAATGAGAACACTGA-AGATCACCGTGATTGGAGTAATAATGACAC-CA 817
Query 825 A-AAATCTCCTGTGCGCAGAAGTGGAAGCTCCAGTGAGTCAGTTGACCTAGTCAGTCCTG 883
| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 818 ACAAATCTCCTGTGCACAGAAGGGGAAGCTCCAGTGAGTCAGTTGACCTAGTAAGTCCTG 877
Query 884 ATAGCACAATATATGAAACTTCTTCTTTTGTACCCCCGTCCAGTCCATATGGCTTTCCTT 943
|||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 878 ATAGCACAGTATATGAAACTTCTCCTTTTGTACCTGCGTCCAGTCCATATGGCTTTCCTT 937
Query 944 CCCCTGGTCCATTTGCAGATGATATCTTTGACTTTCCCTCTCTACCGGTCACAGATTTGT 1003
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 938 CCCCTGGTCCATTTGCAGATGATATCTTTGACTTTCCCTCTCTACCGGTTACAGATTTGT 997
Query 1004 TTGGGAGGAGTAGTTTAGGCAAGAAA-GGACTTTCTACTCCAGATGAAGAAACTTCAACG 1062
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 998 TTGGGAGGAGTAGTTTAGGCAAGAAAGGGA-TTTCTACTCCAGATGAAGAAACTTCAACG 1056
Query 1063 CAAAGTGATTTAAGATCGGAGGATGAGAGAATGCACAGTTTTCGAATTGACAAGAATGCA 1122
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1057 CATAGTGACTTAAGATCGGAGGATGAGAGAATGCACAGTTTTCGAATTTACAATAATGCA 1116
Query 1123 GATTTAGTTATAGAACCGCATGGGTCTTCTTATAATGATGTAACTGCTTCTATTAACTCA 1182
|||||||||||||||||||||||| |||| | | | ||| | || |
Sbjct 1117 GATTTAGTTATAGAACCGCATGGG---TCTTCT-A--A--TAA------C----AA--C- 1155
Query 1183 GAAATTGAAGTTGTACATCTTCAATCTGTTGAAAAGTTGTCTCATTCTGTCTGCACGTCA 1242
| | || |||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1156 G----T-AA-CTGTACATCATGAATCTGTTGAAAAGTTGTCTCATTCTGGCTGCACGTCA 1209
Query 1243 GAGATTGTTGATGGTTTGAGAATATCAGATGTCCCTGAAACGCCGTCGGCAAGGGAGACT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1210 GAGATTGTTGATGGTTTGAGAATATCAGATGTCCCTGAAACGCCGTCGGCAAGTGAGACT 1269
Query 1303 CATACTCGTGGTGGGACTGTAAAGGAAGATCGAGTCTCTGAATGGCTTTGGACATTGCAC 1362
| |||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1270 CCTACTCGAGGTGGGTCTGTAAAGAAAGATCGAGTGTCTGAATGGCTTTGGACATTGCAC 1329
Query 1363 CGGATAGTTGTTGACGTGGTAAGGACAGATAGCCACCTTGAGTTCTATGAGGATCCAGGA 1422
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1330 CGAATAGTTGTTGACGTGGTAAGGACAGATAGCCACCTTGAGTTCTACGAGGATCCAGGA 1389
Query 1423 AATCTAGGTAGAATGTCAGATATCCTTGCGGTCTATGCTTGGGTTGATCCTGCAACTGGT 1482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 AATCTAGGAAGAATGTCAGATATCCTTGCGGTCTATGCTTGGGTTGATCCTGCAACTGGT 1449
Query 1483 TATTGCCAAGGAATGAGCGATTTAGTGTCTCCATTTGTATTTCTTTTTGAAGATAATGCT 1542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1450 TATTGCCAAGGAATGAGCGATTTAGTGTCTCCATTTGTGTTTCTTTTTGAAGATAATGCT 1509
Query 1543 GACGCCTTTTGGTGCTTTGAAATGCTCATAAGAAGAACGCGTGCTAATTTCCAGATGGAG 1602
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1510 GACGCCTTTTGGTGTTTTGAAATGCTCATAAGAAGAACGCGTGCAAATTTCCAGATGGAG 1569
Query 1603 GGACCAACTGGAGTAATGGATCAATTGCAATCACTATGGCGTATATTGCAACTCACAGAT 1662
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1570 GGACCAACTGGAGTGATGGATCAATTGCAATCACTGTGGCGTATATTGCAACTCACAGAT 1629
Query 1663 AAAGAAATGTTTTCACACCTATCACGTATTGGTGCTGAAAGCCTTCACTTTGCGTTCCGG 1722
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1630 AAAGAAATGTTTTCACACCTATCACGTATTGGTGCTGAGAGCCTTCACTTTGCGTTCCGG 1689
Query 1723 ATGCTGTTAGTGTTGTTTCGACGAGAGTTGTCTTTTAACAAGGCTCTGAGGATGTGGGAG 1782
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1690 ATGCTGTTAGTGTTGTTTCGACGAGAGTTGTCTTTTAACGAGGCTCTAAGGATGTGGGAG 1749
Query 1783 ATGATGTGGGCTGCTGATTTTGATGAGTCTTTTGCTGAAACTTTAGAGAAGGATTGCTTG 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 ATGATGTGGGCTGCTGATTTTGATGAGTCTTTTGCTGAAACTTTAGAGAAGGATTGCTTG 1809
Query 1843 AAGCCGTTGGTTGTTCAGCTTCCAAAACGATCTGGAGTTGATATGGGGGACCATAAAATA 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 AAGCCGTTGGTTGTTCAGCTTCCAAAACGATCTGGAGTTGATATGGGGGACCATAAAATA 1869
Query 1903 GATGATGGAAATGGCACAACTACAAATAGTGAATCAACTTCAAAGAGCGACCGGACTTCA 1962
||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||| ||||||
Sbjct 1870 GATGATGGAAATGGCACTACTACAAATTGTGAACCAACTTCGAAGAGCGACCGAACTTCA 1929
Query 1963 AAGAGCAGTCTGTTGTCCAAGAGCGGTCTACTGCCAGAAAGTGGTCCATTGCCAAAAACT 2022
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AAGTGCAGTCTGTTGTCCAAGAGCGGTCTACTGCCAGAAAGTGGTCCATTGCCAAAAACT 1989
Query 2023 GGTCCGCTGTCTGATGATTTTGGGATGAAGCCAGCAGTTTCATCCTGTGGGAAAGGAGAT 2082
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 GGTCCGCTGTCTGATGATACTGGGATGAAGCCAGCAGTTTCATCCTGTGGGAAAGGAGAT 2049
Query 2083 GACCCTCTTCCAGTCTTTTGTGTGGCGGCTATTCTAATCATGAATCGGCATAAAATCATG 2142
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2050 GACCCTCTTCCAGTCTTTTGTGTGGCAGCTATTCTAATCATGAATCGGCATAAGATCATG 2109
Query 2143 AAAGAAACTCGCTCGATCGATGACATGATAAAGATTTGTAATGACAAGCTGCTTGCAATT 2202
|||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2110 AAAGAAACTCACTCGATTGATGACATGATAAAGATTTTTAATGACAAGCTGCTTGCAATT 2169
Query 2203 AGAGTGAGAAGATGCATACGCACAGCCATAAAACTTCGTAAGAAATACTTGTACAAGAAT 2262
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2170 AGAGTGAGAAGATGCATACGTACAGCCATAAAACTTCGTAAGAAATACTTGTACAAGAAT 2229
Query 2263 CAGGTAATCAAGATTGAGAGCCACATTC-AGTCTCAGAATCATAAACACCATGAGATACA 2321
||||||||||||||||||||||||| || | ||||||||||||||||| ||| |||||||
Sbjct 2230 CAGGTAATCAAGATTGAGAGCCACACTCTA-TCTCAGAATCATAAACAGCATCAGATACA 2288
Query 2322 GAATCAAACCGCGATGGAGAACCAAATCCCAGAAGAGATTACAA-GTCATGATGAGAACT 2380
||||||||||||||||||||||||||||| ||| |||||| ||| | |||||||||||||
Sbjct 2289 GAATCAAACCGCGATGGAGAACCAAATCCTAGAGGAGATT-CAAAGACATGATGAGAACT 2347
Query 2381 GTAGCCAAAGACCAAGTTTATGCAATGGTCCTGTCATGCCCCTTAGAGAATGATGACTGA 2440
|||||||||| ||||||||||||| | | |||||| ||||||||||||||||| |
Sbjct 2348 GTAGCCAAAGGCCAAGTTTATGCA--G-TA--GTCATGTCCCTTAGAGAATGATGA--G- 2399
Query 2441 TGAGTACGATAGATTCCACCTATAATT-TATAA-TATTATTTCTAGATTTCCATAGTCTG 2498
| | | ||||||||||||| |||||| | ||| | || ||||||||||| |||||||
Sbjct 2400 T-A-T--GATAGATTCCACCAATAATTGT-TAACT-TTCTTTCTAGATTTT--TAGTCTG 2451
Query 2499 CTAAGATATACAAAAGA 2515
|||| ||||||||||||
Sbjct 2452 CTAAAATATACAAAAGA 2468
> Ahg935251 jgi|Araly1|935251|scaffold_403239.1
Length=2380
Score = 765 bits (414), Expect = 0.0
Identities = 678/802 (85%), Gaps = 32/802 (4%)
Strand=Plus/Plus
Query 1241 CAGAGATTGTTGATGGTTTGAGAATATCAGATGTCCCTGAAACGCCGTC-G-GCAAGGGA 1298
|||| || ||| ||||||||| |||||||||||||||||||| | | || | | || |||
Sbjct 1079 CAGAAATAGTTAATGGTTTGACAATATCAGATGTCCCTGAAATGGCATCAGTG-AA-GGA 1136
Query 1299 GACT-CATACTCGTGGTGGGACTGTAAAGGAAGATCGAGTCTCTGAATGGCTTTGGACAT 1357
|||| | | |||||| ||||| ||| | |||||||||||| ||||||||||||||||| |
Sbjct 1137 GACTCCCT-CTCGTGTTGGGAATGTCACGGAAGATCGAGTGTCTGAATGGCTTTGGACTT 1195
Query 1358 TGCACCGGATAGTTGTTGACGTGGTAAGGACAGATAGCCACCTTGAGTTCTATGAGGATC 1417
|||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1196 TGCATCGAATAGTTGTTGATGTGGTAAGGACGGATAGCCACCTTGAGTTTTATGAGGATC 1255
Query 1418 CAGGAAATCTAGGTAGAATGTCAGATATCCTTGCGGTCTATGCTTGGGTTGATCCTGCAA 1477
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1256 CAGGAAATCTAGGAAGAATGTCGGATATCCTTGCGGTTTATGCTTGGGTTGATCCTGCAA 1315
Query 1478 CTGGTTATTGCCAAGGAATGAGCGATTTAGTGTCTCCATTT-GTATTTCTTTTTGAAGAT 1536
|||||||||| ||||||||||| |||||||| ||||| ||| || |||| |||||||||
Sbjct 1316 CTGGTTATTGTCAAGGAATGAGTGATTTAGTCTCTCC-TTTCGTGGTTCTGTTTGAAGAT 1374
Query 1537 AATGCTGACGCCTTTTGGTGCTTTGAAATGCTCATAAGAAGAACGCGTGCTAATTTCCAG 1596
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1375 AATGCTGATGCCTTTTGGTGCTTTGAAATGCTCATAAGAAGAACGCGTGCGAATTTCCAA 1434
Query 1597 ATGGAGGGACCAACTGGAGTAATGGATCAATTGCAATCACTATGGCGTATATTGCA-ACT 1655
||||||||||||||||| || |||||||||||||||||||| |||| |||||||| | |
Sbjct 1435 ATGGAGGGACCAACTGGGGTGATGGATCAATTGCAATCACTGTGGCACATATTGCAGATT 1494
Query 1656 CACAGATAAAGAAATGTTTTCACACCTATCACGTATTGGTGCTGAAAGCCTTCACTTTGC 1715
||||||||||| || ||||| ||| |||| |||||||| |||||||| ||||| |||||
Sbjct 1495 -ACAGATAAAGATATCTTTTCCCACTTATCGCGTATTGGAGCTGAAAGTCTTCATTTTGC 1553
Query 1716 GTTCCGGATGCTGTTAGTGT-TGTTTCGACGAGAGTTGTCTTTTAAC-AAGGCTCTGAGG 1773
||||||||||| ||||| | |||| ||||| || |||||||||||| ||| |||| |||
Sbjct 1554 CTTCCGGATGCTCTTAGT-TCTGTTCCGACGGGAATTGTCTTTTAACGAAG-CTCTCAGG 1611
Query 1774 ATGTGGGAGATGATGTGGGCTGCTGATTTTGATGAGTCTTTTGCTGAAACTTTAGAGAAG 1833
|||||||||||||||||||| ||||||| |||||| ||| ||||||||||||| |||||
Sbjct 1612 ATGTGGGAGATGATGTGGGCAGCTGATTATGATGAATCTGTTGCTGAAACTTTGGAGAAT 1671
Query 1834 GATTGCTTGAAGCCGTTGGTTG-TTCAGCTTCCAA-AACGATCTGGAGTTGATATGGGGG 1891
||||||||| |||| ||||| | |||||||||||| || ||||| | ||| || | |
Sbjct 1672 GATTGCTTGGAGCCTTTGGT-GATTCAGCTTCCAAGAAA-ATCTGAACCTGAGGTGAGTG 1729
Query 1892 ACCA-TAAAATAGATGATGGAAATGGCACA-ACTACAAATAGTGAATCAAC--T-TCAAA 1946
| | | | |||| ||||||| ||| | | | |||||| || ||| | || | |||||
Sbjct 1730 AAGAATCGA-TAGAGGATGGAATTGGTA-ATAGTACAAAGAGGGAACCTACGATATCAAA 1787
Query 1947 GAGCGA-CCGGACTTCAAAGAGCAGTC-TGT--TGTCCAAGAGCGGTCTACTGCCAGAA- 2001
||| | || | ||||||||| ||| | | |||| | ||||||| | ||||| |||
Sbjct 1788 GAGTGGGCCA-ATTTCAAAGAGTAGTGGTTTGCTGTCGAGGAGCGGTTTGCTGCC-GAAG 1845
Query 2002 AGTGGTCCATTGCCAAAAACTG 2023
|||||||| |||||||| ||||
Sbjct 1846 AGTGGTCCGTTGCCAAAGACTG 1867
Score = 638 bits (345), Expect = 0.0
Identities = 736/914 (81%), Gaps = 69/914 (8%)
Strand=Plus/Plus
Query 267 ACTGATGTTTTCTGCTGGAGAGGGAAAGA-AATGGA-CTCGTCGG-AAAGCTGGTCTTGT 323
|||||||| ||||| |||||| ||||| | |||||| || || || ||||| ||| | ||
Sbjct 117 ACTGATGTGTTCTGGTGGAGAAGGAAA-ACAATGGAGCT-GT-GGAAAAGCGGGTGTAGT 173
Query 324 AAGTCTACAAAAAG-TGGCATCTTTGGTTCGGGATCTGAGAGAGCCTTGTCTTTCACAAT 382
||| | || |||| ||| |||||||||||| ||| |||| |||||||||||||||||||
Sbjct 174 GAGTTTGCAGAAAGTTGG-ATCTTTGGTTCGAGATTTGAGCGAGCCTTGTCTTTCACAAT 232
Query 383 CTCGCATACAAGTTGTTTTGACTATTGGCAAAATGCTTAAGCCTGAGAAGTGGCAGGC-T 441
| || ||||| |||||| | ||||| ||||||||||||||||| ||||||||||| || |
Sbjct 233 CGCGGATACAGGTTGTTATAACTATCGGCAAAATGCTTAAGCCAGAGAAGTGGCAAGCGT 292
Query 442 -TTATTCGATGGCGATGGAAAG-GTTTCCAGTTTCCACAAGGCGCTCAAATTAATTATTT 499
|| || ||| ||||||| ||| ||||| ||||||| |||||||| |||||||||||||
Sbjct 293 CTT-TT-GATAGCGATGG-AAGAGTTTCTGGTTTCCAAAAGGCGCTTAAATTAATTATTT 349
Query 500 TGGGGGGAATCGATCCATCCATAAGAGCTGAAGTTTGGGAATTTCTCCTTGGCTGTTATG 559
||||||||||||| || || || ||||||||||||||||||||||||||||| |||||||
Sbjct 350 TGGGGGGAATCGACCCGTCTATTAGAGCTGAAGTTTGGGAATTTCTCCTTGGTTGTTATG 409
Query 560 CATTAAGCAGCACCTCTGAGTATCGTACGCAACTCAGGGTAGCTCGAAGAGAA-CGATAC 618
| || |||||||||||||||| |||| |||||||||||||||||||| ||| |||||
Sbjct 410 CGTTGGGCAGCACCTCTGAGTACCGTAATCAACTCAGGGTAGCTCGAAG-GAAGCGATAT 468
Query 619 AATGAGCTGCTCAAGCAATGCCAGATGATGCATTCGACTGTGGGAACTGGTTCACTTGCC 678
||||| ||||||||||||| |||| ||||||||| | ||||||||||||||||||||||
Sbjct 469 AATGATTTGCTCAAGCAATGTCAGACGATGCATTCAAGTGTGGGAACTGGTTCACTTGCC 528
Query 679 TATGTTGTCGGATCTAAAGTTATGGATATGCGAAAATCATACAAAAATGAGGT-AGTAAA 737
||||| || || |||||||||||||||||||| ||||| || | | ||||| | ||||||
Sbjct 529 TATGTCGTGGGTTCTAAAGTTATGGATATGCGGAAATCTTATAGAGATGAG-TCAGTAAA 587
Query 738 GGAGGATA-TA--GATGAAAGCCG-G--GAAGCTTGTT-TAGATGGGCATGAGAA--C-A 787
|| | || || ||||||| | | | ||||||| || ||||| |||| || | |
Sbjct 588 GGTTGCTACTACAGATGAAAACAGAGAAGAAGCTT-TTATAGATAATAATGATAATGCTA 646
Query 788 ---CTGACAATCA-CG--GTGATTGGAGTAATAATGATACTGAAAAATCTCCTGTGCGCA 841
|||| ||||| | |||||||||||||||||| |||||| | ||||| ||| | ||
Sbjct 647 ATACTGAAAATCATCACAGTGATTGGAGTAATAATGGTACTGATACATCTCATGTACACA 706
Query 842 GAAGTGGAAGCTCCAGTGAGTCAGTTGACCTAGTCAGTCCT-GATA--G-CAC--A-A-- 892
|||| ||||| || |||||||||||||| |||| ||| || | | | | | |
Sbjct 707 GAAGGGGAAGTTCTAGTGAGTCAGTTGATTTAGTAAGTGGAAGAGAAAGTC-CGGAGAGC 765
Query 893 -TA-TATG-AA-ACTTCTTCTTTTGTACCC-CCGTCCAGTCCATATGGCTTTCCTTCCCC 947
|| ||| || ||||| || |||||| | || || ||||||||||||||| |||||||
Sbjct 766 GTAGTATACAACACTTCCTCCTTTGTATCTGCC-TCTAGTCCATATGGCTTTGCTTCCCC 824
Query 948 TGGTCCATTTGCAGATGATATCTTTGACTTTCCCTCTCTACCGGTCACAGATTTGTTTGG 1007
|| | | | | ||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 825 TGA-C-----G--G-T--TAT-TTCGACTTTCCCTCGCTACCGGTTACAGATTTGTTTGG 872
Query 1008 GAGGAGTAGTTTAGGCAAGAA--AGGACTTTCTACTCCAGATGAAGAAACTTCAACGCAA 1065
||||| |||||||| |||| ||| ||||||| ||||| || || ||||| | ||
Sbjct 873 GAGGAATAGTTTAGATAAGATTGAGG--TTTCTACGCCAGACGAGGATGCTTCATTGAAA 930
Query 1066 AGTGATTTAAGATCGGAGGATGAGAG-AATGCACAGTTTTCGAATTGACAAGAATGCAGA 1124
||||| |||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||
Sbjct 931 AGTGAATTAAGATCTGAGGATGAG-GCAATGCACAATTTTCGAATTGATAAGAATGCTGA 989
Query 1125 TTTAGTTATAGAAC 1138
|||||||| |||||
Sbjct 990 TTTAGTTAGAGAAC 1003
Score = 307 bits (166), Expect = 2e-82
Identities = 291/350 (83%), Gaps = 14/350 (4%)
Strand=Plus/Plus
Query 2058 AGTTTCATCC-TGTGGGAAAGGAGATGACCCTCTTCCAGTCTTTTGTGTGGCGGCTATTC 2116
|||||||||| | | ||||| ||||| ||||||| ||||||||||||||||| |||
Sbjct 1983 AGTTTCATCCAT-TAAAAAAGGGGATGATGCTCTTCCTGTCTTTTGTGTGGCGGCGATTT 2041
Query 2117 TAATCATGAATCGGCATAAAATCATGAAAGAAACTCGCTCGATCGATGACATGATAAAGA 2176
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2042 TAATCATGAATCGACATAAGATCATGAAAGAAACTCGCTCGATCGATGACATGATACAGA 2101
Query 2177 T-TTGTAATGACAAGCTGCTTGCAATTA-GAGTGAGAAGATGCATACGCACAGCCATAAA 2234
| || ||||| ||| | |||| | || | |||||||||||||||||||||||||| ||
Sbjct 2102 TCTTC-AATGATAAGGTTCTTGTA-TTCCGCGTGAGAAGATGCATACGCACAGCCATGAA 2159
Query 2235 ACTTCGTAAGAAATACTTGTACAAGAATCAGGTAATCAAGATTGAGAGCCACATTCAGTC 2294
|||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 2160 ACTTCGTAGGAAATACATGTACAAGAGTCAGGTAATCAAGACCAAGAGCCACACTCAGTC 2219
Query 2295 TCAGAATCATAAAC-ACCATGAGATACAGAATCAAACCGCG-ATGGAGAACCAAATCCCA 2352
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Sbjct 2220 TCAGAATC-TCAACCAGGTTCAAATCCAGCATCAAACC-CATATGGAGAGCCAGAGACCG 2277
Query 2353 GAAGAGATTACA-AGTCATGATGAGAACT-GTAGCCAAAGACCAAGTTTA 2400
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Sbjct 2278 GAGGAGATT-CAGAGTCATGGTGAGAACCAG-AGCCAAACACCAAGTTTA 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99225088225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5