BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59580.1
Length=2884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898914 jgi|Araly1|898914|Al_scaffold_0005_2880 3197 0.0
Ahg483462 jgi|Araly1|483462|fgenesh2_kg.4__2522__AT2G43500.1 335 1e-90
> Ahg898914 jgi|Araly1|898914|Al_scaffold_0005_2880
Length=2646
Score = 3197 bits (1731), Expect = 0.0
Identities = 1966/2078 (95%), Gaps = 21/2078 (1%)
Strand=Plus/Plus
Query 766 GATGAAGCATGCATTAGATAACGAAGTCCGTGGTTCGATTGCAATTCCTGTCCTTGAAGC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GATGAAGCATGCATTAGATAACGAAGTCCGTGGTTCGATTGCAATTCCTGTCCTTGAAGC 641
Query 826 ATCAGGTTCTTCTTGTTGTGCAGTTCTGGAACTTGTGACATGTAGGGAAAAACCAAACTT 885
||| || |||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 642 ATCTGG---TTCTTGTTGTACAGTCCTGGAACTTGTAACATGTAGGGAAAAACCAAACTT 698
Query 886 TGATGTGGAGATGAACTCTGTTTGCCGTGCTCTGCAGGCCGTGAACTTACAAACATCAAC 945
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 699 TGATGTGGAGATGGACTCTGTTTGCCGTGCTCTGCAGGCTGTGAACTTACAAACATCAAC 758
Query 946 TATTCCTCGTCGCCAGTACCTTTCAAGTAATCAAAAAGAAGCTTTGGCTGAAATAAGAGA 1005
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TATTCCTCGTTGTCAGTACCTTTCAAGTAATCAAAAAGAAGCTTTGGCTGAAATAAGAGA 818
Query 1006 TGTTCTCAGAGCAGTGTGCT-ATGCACATAGGTTGCCTTTAGCTCTAGCTTGGATTCCCT 1064
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 819 TGTTCTCAGAGCAGTGTG-TCATGCACATAGGTTGCCTTTAGCTCTAGCTTGGATTCCCT 877
Query 1065 GTAGTTACTCCAAAGGAGCAAACGATGAGTTGGTAAAGGTTTATGGAAAAAACTCAAAGG 1124
||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||| |||||||
Sbjct 878 GTAGTTACTCCAAGGGAGCAAACGGTGAATTGGTAAAGATTTATGGCAAAAATTCAAAGG 937
Query 1125 AATGTTCTCTTCTTTGCATAGAAGAGACATCATGTTATGTGAATGATATGGAAATGGAAG 1184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 938 AATGTTCTCTTCTTTGCATAGAAGAGACAGCATGTTATGTGAATGATATGGAAATGGAAG 997
Query 1185 GCTTTGTGAATGCATGTTTGGAGCATTATCTAAGAGAAGGGCAAGGAATTGTTGGCAAAG 1244
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 998 GCTTTGTGAATGCATGCTTAGAGCTTTATCTAAGAGAAGGGCAAGGAATTGTTGGCAAAG 1057
Query 1245 CACTCATATCAAACAAACCGTCTTTCTCATCTGATGTAAAGACATTTGATATCTGCGAGT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CACTCATATCAAACAAACCGTCTTTCTCATCTGATGTAAAGACATTTGATATCTGCGAGT 1117
Query 1305 ACCCTCTTGTTCAACATGCTCGAAAGTTTGGTCTTAATGCTGCAGTTGCTACCAAACTGA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACCCTCTTGTTCAACATGCTCGAAAGTTTGGTCTTAATGCTGCAGTTGCTACCAAACTGA 1177
Query 1365 GGAGCACATTCACTGGTGACAATGACTATATACTTGAGttttttttACCTGTAAGTATGA 1424
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1178 GGAGCACATTCACTGGTGACAGTGACTATATACTTGAGTTTTTCTTACCTGTAAGTATGA 1237
Query 1425 AGGGAAGCTCAGAACAACAACTTTTGCTGGACAGTCTCTCGGGCACCATGCAGAGACTAT 1484
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1238 AGGGAAGCTCAGAACAACAACTTTTGCTGGACAGTCTCTCGGGCACGATGCAGAGAATAT 1297
Query 1485 GTCGGACTCTGAA-AACTGTTTCAGATGCTGAATCAATTGACGGTACAGAATTTGGATCT 1543
|||| ||||| || ||||||||||||||| |||||| ||| ||||| |||||||||| |
Sbjct 1298 GTCGAACTCT-AAGAACTGTTTCAGATGCCGAATCAGCTGAAGGTACTGAATTTGGATTT 1356
Query 1544 CGTAGTGTAGAAATGACAAATCTCCCACAGGCTACTGTATCCGTTGGAAGCTTTCATACG 1603
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1357 CTTAGTGGAGAAATGACAAATCTCCCACAGGCTACTGTATCCGATGGAAGCTTTCAGACA 1416
Query 1604 ACATTTCTTGATACTGACGTCAACTCTACTCGAAGTACCTTTTCGAACATCTCCTCTAAT 1663
||||| | |||||| ||||||||||||||||||||| |||||||||| | |||||| ||
Sbjct 1417 ACATTCCCGGATACTAACGTCAACTCTACTCGAAGTAACTTTTCGAACGTGTCCTCTGAT 1476
Query 1664 AAAAGAAATGAAATGGCAGGTTCTCAAGGCACTCTTCAGCAGGAAATTAGCGGAGCAAGA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 AAAAGAAATGAAATGGCAGGTTCTCAAGGCACTCTTCAGCAGGAAATTAGCGGAGCAAGA 1536
Query 1724 AGATTAGAGAAGAAGAAAAGCAGTACAGAGAAGAATGTGAGCTTAAATGTTCTCCAACAA 1783
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AGATCAGAGAAGAAGAAAAGCAGTACAGAGAAGAATGTGAGCTTAAATGTTCTCCAACAA 1596
Query 1784 TACTTCTCTGGGAGCTTAAAGGATGCTGCAAAAAGCCTTGGTGTTTGTCCGACTACACTA 1843
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1597 TACTTCTCTGGGAGTTTAAAGGATGCTGCAAAAAGCCTTGGTGTTTGTCCAACTACACTT 1656
Query 1844 AAAAGGATATGTAGACAACACGGAATTATGAGATGGCCATCTCGAAAGATTAACAAAGTG 1903
||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1657 AAACGGATATGTAGACAACACGGAATCATGAGATGGCCATCTCGCAAGATTAACAAAGTG 1716
Query 1904 AATAGGTCACTAAGGAAAATACAGACGGTGCTTGACTCTGTCCAGGGTGTAGAAGGAGGA 1963
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1717 AATAGGTCACTAAGGAAAATACAGACAGTGCTTGACTCTGTCCAGGGTGTAGAAGGAGGA 1776
Query 1964 CTGAAGTTTGACTCGGTGACAGGGGAATTTGTAGCAGTTGGCCCTTTTATACAAGAATTT 2023
||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1777 CTGAAATTTGACTCGGTAACAGGGGAATTTGTAGCAGTTGGCCCTTTTATATAAGAATTT 1836
Query 2024 GGGACCCAAAAGAGTCTGTCTTCTCATGATGAAGATGCACTTGCAAGAAGCCAAGGTGAT 2083
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 GATACTCAAAAGAGTCTGTCTTCTCATGATGAAGATGCACTTGCAAGAAGCCAAGGTGAT 1896
Query 2084 ATGGATGAAGATGTGTCAGTAGAGCCTTTGGAAGTTAAATCTCATGATGGTGGCGGTGTC 2143
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| || |||
Sbjct 1897 ATGGATGAAGATGTGTCATTAGAGCCTTTGGAAGGTAAATCTCATGATGGTGGTGGGGTC 1956
Query 2144 AAGTTGGAGGAGGATGTTGAAACAAACCACCAAGCGGGACCAGGATCCTTGAAGAAGCCA 2203
||||||||||||||||||||||||||||| | || | |||||||||||||||| |||||
Sbjct 1957 AAGTTGGAGGAGGATGTTGAAACAAACCA--A-GCAGAACCAGGATCCTTGAAGGAGCCA 2013
Query 2204 TGGACTTGGATAAGCAAACAGTCTGGCTTGATCTATAGTGATGATACCGACATAGGAAAA 2263
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2014 TGGACTTGGATAAGCAAACAGTCTGGCTTGATCTATAGTGATGATATTGATATAGGAAAA 2073
Query 2264 AGAAGTGAAGAGGTAAACAAGGATAAAGAAGACCTTTGTGTTCGAAGGTGCTTGAGCTCT 2323
|| |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||
Sbjct 2074 AGGAGTGAAGAGGTAAAGAAGGATAAAGA---CCTTTGCGTTCGTAGGTGCTTGAGCTCT 2130
Query 2324 GTAGCACTTGCAGGTGATGGA-ATGAATACAAGAATCGAGCGAGGTAATGGAACTG-TAG 2381
|||||||||||||| |||| | ||||||||| |||||||||| |||||||||| || |||
Sbjct 2131 GTAGCACTTGCAGGCGATG-ATATGAATACAGGAATCGAGCGCGGTAATGGAA-TGGTAG 2188
Query 2382 AACCAAACCACTCCATATCAAGTAGCATGTCGGATTCATCAAATAGCTCAGGAGCAGTTT 2441
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2189 AACCAAACCAATCCATATCAAGCAGCATGTCGGATTCATCAAATAGCTCAGGAGCAGTTT 2248
Query 2442 TGCTGGGAAGTTCATCTGCTTCCTTGGAACAAAACTGGAACCAAATAAGAACTCATAACA 2501
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2249 TGTTGGGAAGTTCATCTACTTCCATGGAACAAAACTGGAACCAAATAAGAACTCATAACA 2308
Query 2502 ATAGCGGTGAAAGCGGATCAAGTTCAACACTAACCGTAAAAGCCACTTACAGAGAGGACA 2561
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 2309 ATAGCGGTGAGAGCGGATCAAGTTCAACACTGACAGTAAAAGCCACTTATAGAGAGGACA 2368
Query 2562 CTGTACGTTTCAAGCTTGATCCATA-CGTTGTTGGGTGTTCTCAGCTCTACAGAGAAGTG 2620
||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 2369 CTGTACGTTTCAAGCTTGATCCATATC-TTGTTGGGTGTTCTCAGCTGTACAGAGAAGTG 2427
Query 2621 GCTAAGCGTTTCAAGCTGCAAGAAGGTGCCTTTCAGTTGAAATACTTGGATGATGAAGAA 2680
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2428 GCTAAGCGTTTCAAGCTGCAAGAAAGTGCCTTTCAGTTGAAATACTTGGATGATGAAGAA 2487
Query 2681 GAATGGGTGATGTTGGTCACAGATTCTGATCTCCATGAATGCTTCGAGATATTAAATGGT 2740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2488 GAATGGGTGATGTTGGTCACAGATTCTGATCTCCATGAATGCTTCGAGATATTAAACAGT 2547
Query 2741 ATGAGAAAACATACAGTGAAGTTTCTGGTCCGTGATATACC-GAACACCGCAATGGGAAG 2799
||||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||||
Sbjct 2548 ATGAGAAAACATACAGTAAAGTTTCTGGTCCGTGACATACCTGGAG-CCGCAATGGGAAG 2606
Query 2800 TTCCGCAGGCAGCAATGGTTACCTCGGAACAGGCACCT 2837
|||||||||||||||||||||||||||| |||||||||
Sbjct 2607 TTCCGCAGGCAGCAATGGTTACCTCGGAGCAGGCACCT 2644
Score = 699 bits (378), Expect = 0.0
Identities = 506/562 (90%), Gaps = 31/562 (6%)
Strand=Plus/Plus
Query 155 ATGGAGAACCCATCAGCATCCAGAGATAATAAAGGTTTCTGTTTTCCAGATATTCCAGTA 214
||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGAACCCATCATCATCCAGAG---ACAAAGGTTTCTGTTTTCCAGAAATTCCAGTA 57
Query 215 GAAGAAATGGATGGCTGGGTTAAGAATTTGATCTCTGAAGAAGATATGTTTAGCTCCTCT 274
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAAGAAATGGATGGTTGGGTTAAGAATTTGATCTCTGAAGAAGATATGTTTAGCTCCTCT 117
Query 275 TCAACTTCAGAGCTTATGAATTTCGAATCTTTTGCTTCATGGTGCAACAGCCCTTCCGCT 334
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 TCAACTTCAGAGCTTATGAATTTTGAATCTTTTGCTTCATGGTGCAACAGCCCTTCCGCT 177
Query 335 GCAGATATCTTGTTCACTCAATACGGTTTATCGACCTCTCAATCTATTATACCTTTCGGA 394
|||||||||||||| ||||||||||||||||||||| | | | ||||| |||
Sbjct 178 ACAGATATCTTGTTCTCTCAATACGGTTTATCGACCTGT--A-C------GCCTTTTGGA 228
Query 395 GGCTTAGAAGGCTCATACGCTTGCGAGAAAAGA-C--C-----G-TTA----G-ACTGT- 439
||||||||||||||||||||| |||| |||||| | | | ||| | | ||
Sbjct 229 GGCTTAGAAGGCTCATACGCTGGCGAAAAAAGACCGACGAGTAGTTTATCCGGCGCAGTA 288
Query 440 -AC--TAGTGTTCCAAGGTCATTGAGCCATTCTCTTGATGAGAAGATGCTCAAAGCATTA 496
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 289 GACTGTAGTGTTCCAAGGTCATTGAACCACTCTCTTGATGAGAAGATGCTCAAAGCATTA 348
Query 497 AGTTTGTTTATGGAGTTCTCTGGAGAGGGAATTCTGGCACAGTTTTGGACTCCTATTAAG 556
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 349 AGTTTGTTTATGGAGTTCTCTGGAGAGGGAATCCTGGCACAGTTTTGGACTCCTATTAAG 408
Query 557 ACAGGAGATCAGTACATGCTTAGTACTTGTGATCAGGCGTATCTGCTTGACTCGAGGCTA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACAGGAGATCAGTACATGCTTAGTACTTGTGATCAGGCGTATCTGCTTGACTCGAGGCTA 468
Query 617 TCTGGATACCGTGAAGCGTCGAGGAGATTCACTTTCTCTGCTGAAGCAAATCAATGCTCT 676
|| ||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 469 TCCGGATACCGTGAAGTGTCGAGGAGGTTCACTTTCTCTGCAGAAGCAAATCAGGGCTCT 528
Query 677 TATCCAGGTCTTCCAGGCAGAG 698
||||||| | ||| ||||||||
Sbjct 529 TATCCAGATTTTC-AGGCAGAG 549
> Ahg483462 jgi|Araly1|483462|fgenesh2_kg.4__2522__AT2G43500.1
Length=2963
Score = 335 bits (181), Expect = 1e-90
Identities = 375/465 (81%), Gaps = 27/465 (6%)
Strand=Plus/Plus
Query 2377 TGTAGAACCAAACCACTCCATATCAAGTAGCATGTCGGATTCATCAAATAGCTCAGGAGC 2436
||| ||||| ||| | ||||| ||| | ||||| || |||||||||||| ||||||| ||
Sbjct 2370 TGTTGAACCTAACAAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGTGC 2429
Query 2437 AGTTTTGCTG-GGAAGTTCATCTGCTTCCTTGGAACAAAACTGGAACCAAATAAGAACTC 2495
|||| ||| | ||||| |||||| ||||||||| || | ||||||||||| ||||| |
Sbjct 2430 AGTTCTGC-GCGGAAGCTCATCTACTTCCTTGG---AAGATTGGAACCAAATGAGAACCC 2485
Query 2496 ATAAC---AATAGCGGTGAAAGCGGATCAAGTTCAACACTAACCGTAAAAGCCACTTACA 2552
| ||| |||||||| || || |||||| |||| || | |||||| |||||||| |
Sbjct 2486 ACAACAATAATAGCGGCGAGAGTAGATCAA---CAACGCTGATCGTAAAGGCCACTTATA 2542
Query 2553 GAGAGGACACTGTACGTTTCAAGCTT-GATCCATACGTTGTTGGGTGTTCTCAGCTCTAC 2611
||| |||||||||||||||||| || || |||| || ||||||||| |||||||||||
Sbjct 2543 AAGAAGACACTGTACGTTTCAAG-TTCGAGCCAT-CG--GTTGGGTGTCCTCAGCTCTAC 2598
Query 2612 AGAGAAG-TGGCTAAGCGTTTCAAGCTGCAAGA-AGGTGCCTTTCAGTTGAAATACTTGG 2669
| ||||| ||| || ||||| || || ||||| ||| | ||||| |||| |||||||
Sbjct 2599 AAAGAAGTTGG-GAAACGTTTTAAACTACAAGACGGGT-CGTTTCAACTGAAGTACTTGG 2656
Query 2670 ATGATGAAGAAGAATGGGTGATGTTGGTCACAGATTCTGATCTCCATGAATGCTTCGAGA 2729
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||
Sbjct 2657 ATGATGAAGAAGAATGGGTGATGCTGGTTACAGATTCTGATCTCCAAGAATGCTTGGAGA 2716
Query 2730 TATTAAATGGTATGAGAAAACA-TACAGTGAAGTTTCTGGTCCGTGATATACC-GAACAC 2787
|| || |||||||| ||||||| | |||||||||||||||| || ||| | || | | |
Sbjct 2717 TACTATATGGTATGGGAAAACACT-CAGTGAAGTTTCTGGTTCGGGATTTGCCTGT-C-C 2773
Query 2788 CGCAATGGGAAGTTCCGCAGGCAGCAATGGTTACCTCGGAACAGG 2832
| ||| | |||| | ||||||||||||||||| ||||||||
Sbjct 2774 TT-ATTGGTA-GTTCTGGTGGCAGCAATGGTTACCTAGGAACAGG 2816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108861920210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5