BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59590.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938977 jgi|Araly1|938977|scaffold_503168.1 372 4e-102
> Ahg938977 jgi|Araly1|938977|scaffold_503168.1
Length=407
Score = 372 bits (201), Expect = 4e-102
Identities = 254/280 (91%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1087 ATTATGATCGCTGGAGGCGACTACATTGAAGCCGTCGAGGGGACCTACACTGAAAGCCAT 1146
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 109 ATTATGATCGCTGGAGGCGACTACATCGAAGCTGTCGAGGGGACCTACACTGAAAGCCAT 168
Query 1147 ATCACCTCCATTACATTTCGGATGCGCAAGGGAGACATGATGCCACAGTACGGACGCTTG 1206
||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 169 ATCACCTCCATCACATTTCGGATGTACAAGGGAGGCATGATGCCACAGTACGGACGCTTG 228
Query 1207 AACGGGACGCCCTTCTCGCTTCGAGGAGAACGAGGCTCCAAGGCCATCGGGTTTTACGGA 1266
||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 229 AACGGGATGCCCTTCTCGCTTCGAGGAGAACGAGGCGAGAAGGTCATCGGGTTTTACGGA 288
Query 1267 AGAAGCTCTGGTGTCCACCTCACTGCTCTCGGCGTCCACTTCTCT-CCACCCCCTCTATA 1325
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 289 AGAAGCTCTGATGTCCACCTCACTGCTCTCGGCGTCCACTTCTCTGCC-CCCCCTCTAGC 347
Query 1326 TTATTCGTTTCCTAACCATTCACCAGTTTTTAATTATTAA 1365
|| ||| |||| ||| | |||||| | ||||| || |||
Sbjct 348 TTTTTCATTTCGTAATAAGTCACCAATATTTAAGTACTAA 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5