BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59600.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938978 jgi|Araly1|938978|scaffold_503169.1 815 0.0
Ahg923994 jgi|Araly1|923994|scaffold_105275.1 689 0.0
Ahg923157 jgi|Araly1|923157|scaffold_104438.1 128 6e-29
> Ahg938978 jgi|Araly1|938978|scaffold_503169.1
Length=481
Score = 815 bits (441), Expect = 0.0
Identities = 459/468 (98%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 125 TTTGAAGATGGCGAGCAATATTATCATGTTCGAGGATATCTTCGTGGTCGATAAGCTAGA 184
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 14 TTTGTAGATGGCGAGCAATATTATCATGTTCGAGGATATATTCGTGGTCGATAAGCTAGA 73
Query 185 CCCTGATGGCAAAAAGTTCGATAAAGTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CCCTGATGGCAAAAAGTTCGATAAAGTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGA 133
Query 245 AATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 134 AATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAATT 193
Query 305 CACGCTGGCTATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTAC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CACGCTGGCTATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTAC 253
Query 365 TCCGGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTTA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCCGGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTTA 313
Query 425 CAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGTTATATGTTTCGTTCGGGGG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 314 CAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGTTATATGTTTCGTTCGGCGG 373
Query 485 GCTCCTGATGTTGCTTCAGGGAGATCCAGCTCATATTTCTCACTTCGAACTTGACCAGAG 544
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 374 CCTCCTGATGTTGCTTCAGGGAGATCCAGCTCACATTTCTCACTTCGAACTTGACCAGAG 433
Query 545 GCTCTTTCTACTCATGAGGAAGCTTTGAGATGCCATTGTCTAATCACT 592
||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 434 GCTCTTTTTACTAATGAGGAAGCTTTGAGATGCCATTGTCTGATCACT 481
> Ahg923994 jgi|Araly1|923994|scaffold_105275.1
Length=490
Score = 689 bits (373), Expect = 0.0
Identities = 436/467 (93%), Gaps = 2/467 (0%)
Strand=Plus/Plus
Query 125 TTTGAAGATGGCGAGCAATATTATCATGTTCGAGGATATCTTCGTGGTCGATAAGCTAGA 184
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 22 TTTGCAGATGGCGAGCAATATCATCTTGTTCGAGGATATCTTCGTGGTCGATAAGCTAGA 81
Query 185 CCCTGATGGCAAAAAGTTCGATAAAGTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGA 244
|||||||||||||||||| ||||||||||| || ||| |||| | |||||||||||||||
Sbjct 82 CCCTGATGGCAAAAAGTTTGATAAAGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGA 141
Query 245 AATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTT 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 142 AATGTTTATGCATTTAGATGTTAACACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTT 201
Query 305 CACGCTGGC-TATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTA 363
||| || || | | |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 202 CACACTTGCGT-TAGCTCCCACGCTTAATCTCGATGGAACCCCTGATACCGGATATTTTA 260
Query 364 CTCCGGGAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTT 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 261 CTCCGGGAGCAAAGAAAACACTTGCGGATAAGTATGAATACATCATGCACGGGAAGCTTT 320
Query 424 ACAAGATCTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGTTATATGTTTCGTTCGGGG 483
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
Sbjct 321 ACAAGATCTCTGAGCGTGATGGCAAAACTCCAAAAGCAGAGCTATATGTTTCGTTTGGCG 380
Query 484 GGCTCCTGATGTTGCTTCAGGGAGATCCAGCTCATATTTCTCACTTCGAACTTGACCAGA 543
| ||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 381 GCCTCCTGATGTTGCTTAAGGGAGATCCTGCTCACATTTCTCACTTCGAACTCGACCAGA 440
Query 544 GGCTCTTTCTACTCATGAGGAAGCTTTGAGATGCCATTGTCTAATCA 590
||||||| ||||||||||||||||| |||||| ||||||||| ||||
Sbjct 441 GGCTCTTCCTACTCATGAGGAAGCTGTGAGATACCATTGTCTGATCA 487
> Ahg923157 jgi|Araly1|923157|scaffold_104438.1
Length=284
Score = 128 bits (69), Expect = 6e-29
Identities = 90/100 (90%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 209 AGTTACGCG-TGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTA 267
|||||| || | || |||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AGTTACTCGCT-TTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGAGGTTA 118
Query 268 ACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCAC 307
|||| |||||||||| ||| ||||||||||||||||||||
Sbjct 119 ACACAGAGGTTTATCAATTTGCTGTTGGTGATAAGTTCAC 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5