BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59630.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486427 jgi|Araly1|486427|fgenesh2_kg.5__2419__AT3G59630.1 2730 0.0
> Ahg486427 jgi|Araly1|486427|fgenesh2_kg.5__2419__AT3G59630.1
Length=1743
Score = 2730 bits (1478), Expect = 0.0
Identities = 1613/1677 (96%), Gaps = 14/1677 (1%)
Strand=Plus/Plus
Query 9 TTCTTCAGCCGCAAATCCAAGTCGACGAATACGACGATTTTAGTTATTCGGCCGGAAAGG 68
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTCTTCGGCCGCAAATCCAAGTCGACGAAT---ACGATTTTAGTTATTCGGCCGGAAAGG 57
Query 69 TTGATAATTT-CGTGTGATTAATCTATGGAGTTGGAATTTGAATCAAAGTACGAGATTAA 127
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 58 TTGATAATTTCCG-GTGATTAATCTATGGAGTTGGAATTTGAATCAAAGTATGAGATTAA 116
Query 128 CCGTACGGCGGAGTTCATTATTAGCAAAAGCTTCACCAGAATTGCTTTACAGTTCCCGGA 187
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCGTACGGCGGAGTTCATTATCAGCAAAAGCTTCACCAGAATTGCTTTACAGTTCCCGGA 176
Query 188 TGAGTTGTTAAAAGATTCGACTAAGGTCGTGAGTGCTCTTAAGAGCAAAACTCGTTTGCT 247
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGACTTGTTAAAGGATTCGACTAAGGTCGTGAGTGCTCTTAAGAGCAAAACTCGTTTGCT 236
Query 248 TACTGACAGAGAAGTCAGGTTCTTTGTAATGGCTGACACAACTTATGGTAGTTGCTGTAT 307
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 237 TACTGACAGAGAAATCAGGTTCTTTGTAATGGCTGACACAACTTATGGTAGCTGCTGCAT 296
Query 308 TGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATG 367
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 297 TGATGAAGTTGGAGCTTTGCATATTGATGCTGAATGTGTTGTTCATTATGGTCAAACATG 356
Query 368 TCTAAGCCCGACATCAGTTCTTCCAGCATTCTTCGTTTTTGGGAAAGCTTCGATAAACGT 427
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 357 TCTAAGCCCGACATCGGTTCTTCCAGCATTCTTTGTTTTCGGGAAAGCTTCGATAAACGT 416
Query 428 CTCCAGCTGTGTTAAGCATTTGATAGATTATGCGTCAAAGAGCGATAAGCCTATCATGAT 487
||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 417 CTCCAGCTGCGTTAAGCATTTGATAGATTATGCGTCAAAGAGGGATATGCCTATTATGAT 476
Query 488 TCTTTATGGTCTAGAATACGCGCATGTAATTCCACAAATCCGAGAAGAATTAGGATTATC 547
||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 477 TCTTTATGGACTAGAATACGCGCATGTCATTCCCCATATCCGAGAAGAATTAGGATTATC 536
Query 548 GAAGACT-GAT-TC---TCAA-TTATCTGTAGCCAATGTCTTGTGTTCATTCATTAGTCC 601
||||||| | | || | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 GAAGACTGGGTCTCAGTTGAAGTTATCTGTAGCTAATGTCTTGTGTTCATTCATTAGTCC 596
Query 602 ATCCAAAGATCCTAGAGAATCCATGGAGCATCCGAGACCA-TATAGCGAAAGTGATTCTA 660
||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 597 ATCCAGAGATCCTAGAGAACCCATGGAGCATCCGAGACCACT-TAGCGAAAGTGATTCTA 655
Query 661 GTGATAGCTTATCCTCATCTAGGAGCTATAGACTAGGAGGGCTAACTTGGGACTTGCCAG 720
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGATAGCTTATCCTCATCCAGGAGCTATAGACTAGGAGGGCTAACTTGGGACTTGCCAG 715
Query 721 AAGGAAGCAAAATCGAGGACTATTTACTTTTCTGGATAGGTTCTGACAGTTCAGCTTTTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGGAAGCAAAATCGAGGACTATTTACTTTTCTGGATAGGTTCTGACAGTTCAGCTTTTG 775
Query 781 CCAATGTAGTACTGACCTTCAATGGTTGTGACATAGTCAGATATGATGCTGAAGAAGATT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCAATGTAGTACTGACCTTCAATGGTTGTGACATAGTCAGATATGATGCTGAAGAAGATT 835
Query 841 CTTTGGTGACGGAATTTTATCAACAAAGAAGGATACTTAAGCGACGATATTACTTGGTGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CTTTGGTGACGGAATTTTATCAACAAAGAAGGATACTTAAGCGACGATATTACTTGGTGG 895
Query 901 AAAAAGCTAAGGATGCGAATATTATAGGTATTTTGGTGGGGACTCTTGGTGTTGCTGGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAAAAGCTAAGGATGCGAATATTATAGGTATTTTGGTGGGGACTCTTGGTGTTGCTGGTT 955
Query 961 ACCTTCATATGATTCACCATATGCAAGCACTCATATCTGCAGCTGGCAAAAAATCTTACA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACCTTCATATGATTCACCATATGCAAGCACTCATATCTGCAGCTGGCAAAAAATCTTACA 1015
Query 1021 TTCTTGCCATGGGACGGCCTAACCCGGCCAAACTCGCAAACTTCCCCGAGTGCGATGTTT 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTCTTGCCATGGGACGGCCTAATCCGGCCAAACTCGCAAACTTCCCCGAGTGCGATGTTT 1075
Query 1081 TCATCTACATCTCATGTGCCCAAACGGCTCTTTTAGATAGCAAAGAGTTCATGTCCCCTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCATCTACATCTCATGTGCCCAAACGGCTCTTTTAGATAGCAAAGAGTTCATGTCCCCTG 1135
Query 1141 TCATTACTCCGTTCGAAGCCAATCTTGCTTTTAGCAGAGGGAGTGAATGGACAGGTGCAT 1200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCATTACTCCATTCGAAGCCAATCTTGCTTTTAGCAGAGGGAGTGAATGGACAGGTGCAT 1195
Query 1201 ACCTAATGCATTTCCAAGATGTGATCAACTCTGTAAAATCAGAATCAGAAGCACATATCG 1260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1196 ACCTAATGCATTTCCAAGATGTGATCAACTCTGTAAAATCGGAATCAGAAGCACATAGCG 1255
Query 1261 GATCAGAGGAGCCACGGTTCTCCTTCTTTCAGGGTGGTTACGTAGAAGATCACAAAACAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GATCAGAGGAGCCACGGTTCTCCTTCTTTCAGGGTGGTTACGTAGAAGATCACAAAACAA 1315
Query 1321 ATGATCAAGCTAAGAATGGAGAAGAAGACACAGGAGAGACAATGACATTGGTACAAGCTG 1380
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1316 ACGATCAAGCTAAGAATGGAGAAGAAGACACAGGAGAGACAATGGCATTGGTACAAGCTG 1375
Query 1381 CAGAGAAAGCATTGCAGTTGCGAGGCAATGATCATAACTCATTGACTAAACAAACCGCTG 1440
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1376 CAGAGAAAGCATTGCAGTTGAGAGGCAATGATCATAACTCACTGACTAAACAAACCGCTG 1435
Query 1441 CAAAATCAGGACCTGAGTATTTCCTTAACCGAGTTTATCGCGGTTTGGAGATAAATAGTG 1500
||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 1436 CAAAATCAGGACCTGAGTATTTCCTCAGCCGAGCTTATCGCGGGTTGGAGATAAATAGTG 1495
Query 1501 AGAATACTTTGCCGGAGCCTTATATAGTTGGGAGAAGCGGGAAGGCGTCTGGATACAAGC 1560
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGAATACTTCGCCAGAGCCTTACATAGTTGGGAGAAGCGGGAAGGCGTCTGGATACAAGC 1555
Query 1561 ACGAGTAGCAA-CTCCAAGAAGTTGAGTTTGATCACAAAGAAAGATTTGTGCTATGTCAG 1619
|||| |||||| |||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 1556 ACGAATAGCAAACTCCAAGAAGTTCAGTTTGATCACAAAGATAGATTTGTGCTAGGTCAG 1615
Query 1620 ACACTGTTTTACTGGCTTCCTATGAGATTGTTAGAAGAGAAAATGTTTGCACACACA 1676
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1616 AAACTGTTTTACTGGCTTCGTATGAGATTGTTAGAAGAGAGAATGTTTGCACACACA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5