BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59640.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486428 jgi|Araly1|486428|fgenesh2_kg.5__2420__AT3G59640.2 1380 0.0
Ahg483474 jgi|Araly1|483474|fgenesh2_kg.4__2534__AT2G43630.1 331 5e-90
> Ahg486428 jgi|Araly1|486428|fgenesh2_kg.5__2420__AT3G59640.2
Length=1020
Score = 1380 bits (747), Expect = 0.0
Identities = 869/926 (94%), Gaps = 16/926 (2%)
Strand=Plus/Plus
Query 52 AAGATCCTGGAGTTGATGTATTGAGAGAAGCCATT-GAGATAAGAGATGAGCTCTACGCA 110
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 103 AAGATCCTGGAGTTGATGTATTGAGAGAAGCC-TTGGAGATAAAAGATGAGCTCTACGCA 161
Query 111 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACGCAAACAAGACATGTCTC 170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 162 GGCTAATCTATGCAGACCATCCTTGTTCTGTGCAAGGACAACACAAACAAGACATGTCTC 221
Query 171 TAGT-GCACCTTTTATGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAGCTA 229
| || ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 222 T-GTGGCATCTTTTAAGTCGTCATTACGCTTTGATTATCGACCACTCCCCAAATTAACTA 280
Query 230 TTCGGGCATCTG---CATCATCATCGATGTCTTCTC-AGTTTTCGCCTCTACAGAATCAT 285
|||||||||||| |||||||||| |||||| ||| | |||||||||||||| ||||||
Sbjct 281 TTCGGGCATCTGCATCATCATCATCCATGTCTACTCTA-TTTTCGCCTCTACAAAATCAT 339
Query 286 CGCTGCCGGAATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAGTCT 345
|| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 340 CGATGTCGGAATCAGAGGCAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCT 399
Query 346 AACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAGAAA 405
||||| ||||| ||| |||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 400 AACGGGAGTAACGAGATATCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAA 459
Query 406 TCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 465
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TCGGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGACACTGGCGGCATTCCTCCA 519
Query 466 CGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 525
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 C-A--AGGAGGAGGAGGGGGTGGCGGTAGAAATGGTGGGAATAATGGGTCTGGAGGCTCA 576
Query 526 TCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 585
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAGCA 636
Query 586 ACCTTAGGCTTCATCTTTCTGTACTTCTACATCATCAATGGGGAGGAGTTGTTCCGTCTT 645
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 637 ACCTTAGGCTTCATCTTTCTGTACATCTACATCATCAACGGGGAGGAGTTGTTCCGACTT 696
Query 646 GCAAGAGATTACATTAGGTACCTTATAGGAAGACCCAAGAGTGTTAGGCTGACCCGAGTT 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 697 GCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCCGAGTT 756
Query 706 ATGGAAGGTTGGAGTAGATTCTTCGAGAAG-ATGTCGAGGAAAAAAGTGTATAACGAGTA 764
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 757 ATGGAAGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAACGAGTA 815
Query 765 CTGGCTAAAGATTAAGCGATCATCAACAAGTCTACCTGGTCTGGTAACCCGGGCAAATAC 824
|||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 816 CTGGCTAAAGATCAAGCGATCATCAACACGTCTACCTGGTATGATAACCCGGGCAAATAC 875
Query 825 AAACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATCGGTTTTCTT 884
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 876 AGACGCATCTTGAGATCTTATGTTGATTCAAATGAAATGAAGATAGTGATTGGTTTTCTT 935
Query 885 ACTGGTTTAAGTAGTTTCCCTTAGACCCTTACCCGTGTTTTTGTTTTTG-TTTAAGTTAC 943
|||| | |||||||||||||| |||||| | ||||||||||||||| | |||| |||||
Sbjct 936 ACTGATAAAAGTAGTTTCCCTTGGACCCTGAACCGTGTTTTTGTTTTAGCTTTA-GTTAC 994
Query 944 TTTTGCCAGTAGTAAATATTGATGCT 969
||| |||| |||||||||||||||||
Sbjct 995 TTTCGCCATTAGTAAATATTGATGCT 1020
> Ahg483474 jgi|Araly1|483474|fgenesh2_kg.4__2534__AT2G43630.1
Length=1028
Score = 331 bits (179), Expect = 5e-90
Identities = 595/784 (76%), Gaps = 76/784 (10%)
Strand=Plus/Plus
Query 65 TGA-TGTATTGAGAGAAGCCATTGAGATAAGAGATGAGCTCTACGCAGGCTAA-TCTATG 122
||| || ||| ||||||| ||||| ||| | ||||||||| ||| |||||||| | | |
Sbjct 104 TGATTGCATTAAGAGAAG-CATTGGGATTA-AGATGAGCTTTACTCAGGCTAATTGTTTT 161
Query 123 CAGACCATCCTT-GT-TCTGTGCAAGGACAACGCAAACAAGA-CATGTCTCTAGTGCACC 179
| |||||| ||| | || |||||||| ||| | | ||| | |||||| |||| | |
Sbjct 162 C-GACCAT-CTTACTATC-CTGCAAGGATAACACGACCAA-ATTGTGTCTCCAGTGTATC 217
Query 180 TTTTATGTCGTCATTACGCTTTGATTATC-GACCAC-T-CCCCAAATTAGCTATTCGGGC 236
||| ||| ||| ||||||||||||| | | || | | || | | ||| | |||| ||
Sbjct 218 AATTAGGTCTTCAGTACGCTTTGATTA-CTGCCCGCGTACCTC-ATTTA-CGCTTCGAGC 274
Query 237 ATCTGCATCATCATCGATGTCTTCTCAGTTTTCGCCTCTACAGAATCATCG-C-T-G--- 290
| |||| | || | ||||| |||||||||||||||| | |||||||| | | |
Sbjct 275 AACTGC-T--GCA--G-TGTCTACTCAGTTTTCGCCTCTTCTTAATCATCGCCGTCGTTT 328
Query 291 --C--C--GG-AATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAGT 343
| | || |||| || ||| |||| | |||||| ||| |||||||||| |||||
Sbjct 329 ACCTGCTGGGAAATC-GAAACAAAGTCCGGCTGTGTGCTTATTTGGTGGGAAAGATAAAC 387
Query 344 CTAACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAGA 403
|| | |||||| ||||| || ||| ||||| |||| || |||||||| ||||||||||
Sbjct 388 CTGATGGTAGTGATGAG--AT-ATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAGA 444
Query 404 AATCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGAC----A-----CTG--- 451
|||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 445 AATCAGTTGAAGATATGTTGCGGGAGCAGATACAAAAGAAAGATTTTTATGATACTGACA 504
Query 452 GCGGC---A---TTCCTCCACGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTG-GG 504
||||| | |||||||||| ||| | | || || || | ||| ||||||||| ||
Sbjct 505 GCGGCGGCAACATTCCTCCACGTGGA-G-GCAGT-GGTGGCAGTGGTGGAAATGGTGAGG 561
Query 505 AATAATGGGTC-TGGAGGCTCATCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATGA 563
| | ||| || ||| ||| ||| |||||||||||||||||| | ||| |||||
Sbjct 562 A-----GCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATTGCAGATGA 616
Query 564 AACTCT-GCAAGTGGTATTAGCAACCTTAGGCTTCATCTTTCTGTACTTCTACATCATCA 622
||| || ||||||||| || ||||||||||||||||||||| ||||| |||||| ||||
Sbjct 617 AAC-CTTGCAAGTGGTTTTGGCAACCTTAGGCTTCATCTTTTTGTACACCTACATTATCA 675
Query 623 ATGGGGAGGAGTTGTTCC-GTCTTGCAAGAGATTACATTAGGTACCTTATAGGAAGACCC 681
||||||||| ||| || | |||||||| ||||||||||||| ||||| ||||||||
Sbjct 676 CTGGGGAGGAATTGGTCAAG-CTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCT 734
Query 682 AAGAGTGTTAGGCTGACCCGAGTTATGGAAGGTTGGAGTAGATTCTTCGAGAAGATGTCG 741
|||| |||| | ||||||||| ||||| ||||||| ||||||| ||||||||||||
Sbjct 735 AAGACTGTTCGATTGACCCGAGCCATGGATGGTTGGAACGGATTCTTGGAGAAGATGTCG 794
Query 742 AGGAAAAAAGTGTATAACGAGTACTGGCTAAAGATTAAG-CGATCATCAACAAGTCTACC 800
||| ||| ||||||| | ||||| |||||| | | ||| |||||||||||| | | |||
Sbjct 795 AGGCAAAGAGTGTATGATGAGTATTGGCTAGA-A--AAGGCGATCATCAACACGCCAACC 851
Query 801 TGGT 804
||||
Sbjct 852 TGGT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5