BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59650.2 Length=749 Score E Sequences producing significant alignments: (Bits) Value Ahg486430 jgi|Araly1|486430|fgenesh2_kg.5__2422__AT3G59650.1 621 2e-177 Ahg938989 jgi|Araly1|938989|scaffold_503180.1 200 1e-50 > Ahg486430 jgi|Araly1|486430|fgenesh2_kg.5__2422__AT3G59650.1 Length=640 Score = 621 bits (336), Expect = 2e-177 Identities = 375/394 (95%), Gaps = 1/394 (0%) Strand=Plus/Plus Query 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 300 Query 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475 ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 ATGCAACAAGGCTGAGAAACTCGCTTGGAAGGAAAGTGGTTAAACTGAGGACCAGACATG 360 Query 476 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACTGCTGTCAAATTCTGAGACTTTC 535 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACCGCTGTCAAATTCTGAGACTTTC 420 Query 536 CTGCTAAATTGTTTGCAGGTTTTCATCTTCTAGCTGTTAAATCGAATGTTGCAAGTATCA 595 ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 421 CTGCTAAATAGTTTGCAGGTTTTCTTCTTCTAGCTGTTGAATCGAATGTTGCAAGTATCA 480 Query 596 GGATTGGTCGTTTATCTGTATTGCAACCCCAAGTTGTTTGTACCGTCTGTGACTTGGGAC 655 |||||| || ||||||| |||||||| |||||||||||||||||||||||||||| |||| Sbjct 481 GGATTGATCTTTTATCTATATTGCAATCCCAAGTTGTTTGTACCGTCTGTGACTT-GGAC 539 Query 656 AAAGATGTAGTCTTCAAATGTTTTGCAGTTTTTGCAATGTTTGAATTTTGTCTTGTCCTT 715 | |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 540 AGAGATTTAGGCTTCAAATGTTTTGCAGTTCATGCAATGTTTGAATTTTGTCTTGTCCTT 599 Query 716 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 749 |||||||||||||||||||||||||||||||||| Sbjct 600 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 633 Score = 387 bits (209), Expect = 8e-107 Identities = 219/224 (98%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 52 TCGGTTAGGGTTTTAGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 111 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18 TCGGTTAGGGTTTTTGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 77 Query 112 CTCAAGAAACTCGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 171 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 CTCAAGAAACTTGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 137 Query 172 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGTAATTACC 231 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 138 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTTGAAGTGGTTACC 197 Query 232 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 198 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 241 > Ahg938989 jgi|Araly1|938989|scaffold_503180.1 Length=278 Score = 200 bits (108), Expect = 1e-50 Identities = 118/123 (96%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 126 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 185 Query 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475 ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 186 ATGCAACAAGGCTGAGGAACTCGCTTGGAAGGAAAGTGGTGAAACTGAGGACCAGACATG 245 Query 476 TCA 478 ||| Sbjct 246 TCA 248 Score = 195 bits (105), Expect = 5e-49 Identities = 109/111 (98%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 75 Query 225 AATTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 GGTTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27600991908 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5