BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59650.2
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486430 jgi|Araly1|486430|fgenesh2_kg.5__2422__AT3G59650.1 621 2e-177
Ahg938989 jgi|Araly1|938989|scaffold_503180.1 200 1e-50
> Ahg486430 jgi|Araly1|486430|fgenesh2_kg.5__2422__AT3G59650.1
Length=640
Score = 621 bits (336), Expect = 2e-177
Identities = 375/394 (95%), Gaps = 1/394 (0%)
Strand=Plus/Plus
Query 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 300
Query 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ATGCAACAAGGCTGAGAAACTCGCTTGGAAGGAAAGTGGTTAAACTGAGGACCAGACATG 360
Query 476 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACTGCTGTCAAATTCTGAGACTTTC 535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACCGCTGTCAAATTCTGAGACTTTC 420
Query 536 CTGCTAAATTGTTTGCAGGTTTTCATCTTCTAGCTGTTAAATCGAATGTTGCAAGTATCA 595
||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 421 CTGCTAAATAGTTTGCAGGTTTTCTTCTTCTAGCTGTTGAATCGAATGTTGCAAGTATCA 480
Query 596 GGATTGGTCGTTTATCTGTATTGCAACCCCAAGTTGTTTGTACCGTCTGTGACTTGGGAC 655
|||||| || ||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 481 GGATTGATCTTTTATCTATATTGCAATCCCAAGTTGTTTGTACCGTCTGTGACTT-GGAC 539
Query 656 AAAGATGTAGTCTTCAAATGTTTTGCAGTTTTTGCAATGTTTGAATTTTGTCTTGTCCTT 715
| |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGAGATTTAGGCTTCAAATGTTTTGCAGTTCATGCAATGTTTGAATTTTGTCTTGTCCTT 599
Query 716 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 749
||||||||||||||||||||||||||||||||||
Sbjct 600 CTGGTTGAGTCTATAATAAGATTACACAAGGGTT 633
Score = 387 bits (209), Expect = 8e-107
Identities = 219/224 (98%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 52 TCGGTTAGGGTTTTAGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 111
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 TCGGTTAGGGTTTTTGTTTCTCTTACCGAGATTCAAATGGCGCTTAGAGGAGTTTGGCAG 77
Query 112 CTCAAGAAACTCGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 171
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTCAAGAAACTTGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCC 137
Query 172 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGTAATTACC 231
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 138 TTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTTGAAGTGGTTACC 197
Query 232 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 241
> Ahg938989 jgi|Araly1|938989|scaffold_503180.1
Length=278
Score = 200 bits (108), Expect = 1e-50
Identities = 118/123 (96%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 126 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 185
Query 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 186 ATGCAACAAGGCTGAGGAACTCGCTTGGAAGGAAAGTGGTGAAACTGAGGACCAGACATG 245
Query 476 TCA 478
|||
Sbjct 246 TCA 248
Score = 195 bits (105), Expect = 5e-49
Identities = 109/111 (98%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 165 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 75
Query 225 AATTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GGTTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5