BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59670.1
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486432 jgi|Araly1|486432|fgenesh2_kg.5__2424__AT3G59670.1 3038 0.0
> Ahg486432 jgi|Araly1|486432|fgenesh2_kg.5__2424__AT3G59670.1
Length=1985
Score = 3038 bits (1645), Expect = 0.0
Identities = 1880/1990 (94%), Gaps = 29/1990 (1%)
Strand=Plus/Plus
Query 36 cttc-tctcttactctcttctcgccgcaaaacctcacttgctctctctttctctctGGAT 94
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 22 CTTCTTCTCTTACTCTCTTCTCGCCGCAAAACCTCACTTACTCTCTCTTTCTCTCTGGAT 81
Query 95 CTTTATCGGGGAGCATTACCCGCGTTTTAACTTACGGTTTCCAATGTGAACTAAGAGTGT 154
||| |||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 82 CTTCATCGGGGACCATCACCCGGGTTTTAACTTACGGTTTCCAATGTGAAATAAGAGTGT 141
Query 155 GTTATCAGTTGTGATGACTGTGGCTGAACCACACATGGAGCTCAA-CGAAGAAAGT-AAG 212
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||
Sbjct 142 GTTATCAGTTGTGATGACTGTGGCTGAACCACATATGGAGCTCAATC-AAGAAAGTGAA- 199
Query 213 CAATTCGATGTTGAGAGGTTATCGCCAAAGAAAGAGCAAAGTCCTGGAGGAGAACATAAA 272
|||||| ||| ||||| ||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 200 CAATTCAATGCTGAGAAGTTGTCGCCAAAGAAAGAGCAAAGTCCTGGAGGAGATCATGAA 259
Query 273 GAATGTGGTCTTACCAGTGCTAATACAAGTGAGGAAACTGTTACTTCAGTTTCTGGTGGT 332
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 GAATGTGGTCTTACCAGTGCTAATACAAGTGAGGAAACTGTGACTTCAGTTTCTGGTGGT 319
Query 333 GAGGAATTGGATGTTGATATAGTTGAATCTGATGAAAACAAGACTTCCACCACTGATGAG 392
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 320 GAGGAATTGGATGTTGATATAGTTGAATCTGATGAAAACAACACATCCACCACTGATGAG 379
Query 393 GACCCGAACGCTACTGAATACTCAAGCTCATTTTCCGACACTGCATCTGAGAATGCTGAA 452
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GACCCTAACGCTACTGAATACTCAAGCTCATTTTCCGACACTGCATCTGAGAATGCTGAC 439
Query 453 ATGTTGCTTGATGGACTAACCGGAGAAGCTGAGGTCGAATCTCATTATTGGGATGAAACC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATGTTGCTTGATGGACTAACCGGAGAAGCTGAGGTCGAATCTCATTATTGGGATGAAACC 499
Query 513 GATCTAGGTCCTGCTTATGATTCTTTTAGCAGCATTTTTCATTTTAGGAAGAAAAGGCTA 572
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GATCTAGGACCTGCTTATGATTCTTTTAGCAGCATTTTTCATTTTAGGAAGAAAAGGCTA 559
Query 573 ACTAACCACTGGAGGAGATTTATCAGGCCACTGATGTGGCGGTCCAAGTGGGTTGAGTTA 632
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 560 ACTAATCACTGGAGGAGATTTATCAGGCCACTGATGTGGCGATCCAAGTGGGTTGAGTTA 619
Query 633 AGAATTAGAGAGTTAGAGTCTCGGGCATTAGAATATCCGAAAGAGCTTGAGTTATATGAT 692
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 620 AGAATTAGAGAGTTAGAGTCTCGGGCATTGGAATATCCGAAAGAGCTTGAGTCATACGAT 679
Query 693 CAAGAAAAGCTTGAAGCTAATATTGATCCATCTGTGTTGGAAAGTTGTGGTGAGGGGATA 752
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 CAAGAAAAGCTTGAAGCTAATATTGATCCGTCTGTGTTGGAAAGTTGTGGTGAGGGGATA 739
Query 753 AAGTCATTGCCTTTCTCTAATCCGTGTTACaaaaaaaGAGCAGCAAAGAAGAGAAGAAAG 812
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 740 AAGTCATTGCCTTTTTCTAATCCGTGTTACAAAAAAAGAGCAGCAAAGAGGAGAAGAAAG 799
Query 813 CGTAAGAAGGTCGAGAGCACAGATGATATAGCTTCATATATGGCATGTCACAACCTCTTT 872
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 800 CGTAAGAAGGTTGAGAGCACAGATGATATAACTTCATATATGGCATGTCACAACCTCTTT 859
Query 873 TCTTATATCGAGACCAAGAGATTGAGCTCAGATGGAATGGGATTGGCTGATGACTTTGGT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TCTTATATCGAGACCAAGAGATTGAGCTCAGATGGAATGGGATTGGCTGATGACTTTGGT 919
Query 933 GATGCAAAAGATCCACGGAGTGATTCAAATGAACCGGTAGACTTAGATGACGCTGACTCA 992
||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 920 GATGCCAAAGATCCACAAAGTGATTCAAAGGAACCGGTAGACTTAGATGACGATGACTCA 979
Query 993 CTTTTTCATCACCGAGATGGAGATAGTGTCTTAGAAGAAGTTCTCTGGAAAATCGAGCTG 1052
||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||
Sbjct 980 CTTTTTCATCACCGAGAAGGAGATAATGTCTTAGAAGAGGTTCTCTGGAAAATCGAGCTG 1039
Query 1053 GTGCATTCACAAGTTCATAGATTGAAAACCCAAGTTGATGTTGTTTTGTCCAAGAACACA 1112
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1040 GTGCATTCGCAAGTTCATAGATTGAAAACCCAAGTTGATGTTGTGATGTCCAAGAACGCA 1099
Query 1113 GCAAGGTTCTCTTCCTCAGAGAATCTGAGCCTTCTTGCTGCAAGTTCTGCACCTAGCCCA 1172
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1100 GCAAGGTTCTCTTCCTCAGAGAATCTGAGCCTTCTTGCTGCAAGTTCTGCGCCTAGCCCA 1159
Query 1173 ACGGTTTCTGCTGGAGGAAATGGAGATGTGATCTCCTTTGGAGCAATTTACAATGCTTCA 1232
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1160 ACGGTTTCTGCTGGAGGAAATGGAGATGTGATCTCCATTGGAGCAATTTACAACGCTTCA 1219
Query 1233 CAGCATATGGCAGATTATGGTCTTGGTGATATAGTTTTCTCATCCGAAGGAGTGATTTCG 1292
||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 1220 CAGCATATGGCAGATG-T--TCTTGGTGATTTAGTTTTCTCATCTGAAGGAGTGATTTCG 1276
Query 1293 AGCTATGGGGATGCGTTTCATATTCCTGACATTATTGAAAGCACTGTTGGTCTTTTCGCA 1352
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1277 AGCTATGGGGATGCGTTTCATATTCCTGACATAATTGAAAGTACTGTTGGTCTTTTCGCC 1336
Query 1353 GATGCTGATGTTACATTACATCATCACCAAATTGGAGATTCTTGTGAAGATATTTTGGAT 1412
|| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1337 GACGCTGATGTTACTTTACATCATCCCCAGATTGGAGATTCTTGTGAAGATATTTTGGAT 1396
Query 1413 AACATCTTGATTCGAAATGGAGTGGCTGAAGAAATGAATGGTGATTTGATGGAAACTAGT 1472
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1397 AATATCTTGATTCGAAATGGAGTGGCTGAAGAAATGAATTCTGATTTGATGGAAACTAGT 1456
Query 1473 TGCCATGACGAAGCCGAGAAAGCAGAGGAAGGAGAAGGAACCAGTGTCCCGCCGTTGCAG 1532
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1457 TGCCATGACGAAGCTGAGAAAGCAGAGGAAGGAGAAGGAACCAGTGTGCCGCCATTGCAG 1516
Query 1533 CAAACTGAAGAAACAGAAGAATATAACCAAGAAGAGAAATCTTTGGTACTACAAGGCCGT 1592
||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1517 CAAACTGAAGAGACAGAACAATATAGCCAAGAAGAGAAATCTTTGGTACTACAGGGCCGT 1576
Query 1593 GAAGATTCGGTTCTTAGATCATGCTTAGCCTCTGAAATGCTTGTTCCTAGGAACAAAAGG 1652
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1577 GAAGATTCGGTTCTTAGATCATGCTTAGCTTCTGAAATGCTTGTTCCTAGGAACAAAAGG 1636
Query 1653 ACAAGAGGTGGAGAACGTAAGGCAAGTTCTTGGTGCAAGAAACATCTCAGCGATCCTGAA 1712
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1637 ACAAGAGGTGGAGAACGTAAAGCAAGTTCTTGGTGCAAGAAACATCTCAGCGATCCTGAA 1696
Query 1713 AGCCAGTGATTGATGaaaaaaaCTCAGTAAGCTTTTGATGATCAGAGTCTTTCCTCTTTG 1772
||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 1697 AGCCAGTGATTGATGAAAAAA-CTCAGTAAGCCTTTGATGATCAGAGTCTTTCCTTTTTG 1755
Query 1773 AATCTCCCTTAAATCACAGCTACTATTTTCTACTTCAATATTTTGTTTCTGAACATTCTC 1832
|||||||||| ||||| ||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct 1756 AATCTCCCTTCAATCAGAGCGACTATTT-CTACTTCAATCTTTTGTTTCTAAACATTCTC 1814
Query 1833 TTAGATTTTTCTTTATTTCTGCAGAATCTGTGTGTTCACAGAGAACATTTACTTCTTCtt 1892
|||| ||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 1815 TTAGGTTTTTCTTTATTTCTGCAGAATCTGTGTGTTCACAGA-----TTT--TG-T-C-- 1863
Query 1893 ttttttCATATCATTTTCTTCTTTAGCTTCTTTTCCGTTTTATGATGATGAAAAGTTAGA 1952
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1864 -------ATATCATTTTCTTCTTTAGCTTCTTTTCTGTTTTATGATGATGAAAAGTTGGA 1916
Query 1953 GTGAAGACACAAACTGTGTATAATAAAGCTTTAGATTGTAGTTCTATCATCTTCTTCGTT 2012
| || ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1917 GAGATGACACAAACTGTGTATAATAAAG-TTTAGATTGTAGTTTTATCATCATCTTCGTT 1975
Query 2013 TCACTATTAT 2022
||||||||||
Sbjct 1976 TCACTATTAT 1985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77247016860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5