BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59680.2

Length=994
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898924 jgi|Araly1|898924|Al_scaffold_0005_2890                    894    0.0  


> Ahg898924 jgi|Araly1|898924|Al_scaffold_0005_2890
Length=600

 Score =  894 bits (484),  Expect = 0.0
 Identities = 569/607 (94%), Gaps = 17/607 (3%)
 Strand=Plus/Plus

Query  181  ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTC  60

Query  241  GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCATCACAACAACAACCAGAG  300
            |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||
Sbjct  61   GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCAT--C-ACAACAACCAGAG  117

Query  301  AATT-TTCGTCCGTCTCGAAACCCTAGCGTCAACAGCAAGTCATCCAATCATAA-CCAAA  358
             ||| |||||||||||||||||||||||||||||| ||||||||| ||||| || |||||
Sbjct  118  -ATTCTTCGTCCGTCTCGAAACCCTAGCGTCAACAACAAGTCATCGAATCA-AAGCCAAA  175

Query  359  TTTATCACCAGCTGAGAAAATGCTCGTCTCTCAAGGTAGCTGCGAATTCTTTCACTAGGG  418
            || |||||||||||||||||||||||||| | ||  ||||||||||||| ||||||||||
Sbjct  176  TTCATCACCAGCTGAGAAAATGCTCGTCTTTGAAACTAGCTGCGAATTCGTTCACTAGGG  235

Query  419  TTTGCCTCTGCGCTCCGATTGGTCCATACGACGACGTTTTTCG-GATTCACGTCCCGCCG  477
            |||| ||||||||||| || |||||||||||||||||||| ||  ||| |||||||||||
Sbjct  236  TTTGTCTCTGCGCTCCTATCGGTCCATACGACGACGTTTTCCGAAATT-ACGTCCCGCCG  294

Query  478  AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTA---T---GGAGACGGCAGTG  531
            ||||||||||||||||||||||||||||||||||||||||   |   ||||||||| |||
Sbjct  295  AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTATGGTGACGGAGACGGCGGTG  354

Query  532  GCGGTGGCGA-CGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC  590
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  355  GCGGTGGC-AGCGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC  413

Query  591  GTTGAGGGAAAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATAATGga  650
             |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  414  TTTGAGGGAGAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATGATGGA  473

Query  651  gaatagaaagagagatcaaatggagattgtgaggaagagaaatcagatgaggaggaagaa  710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  GAATAGAAAGAGAGATCAAATGGAGATTGTGAGGAAGAGAAATCAGATGAGGAGGAAGAA  533

Query  711  gaaGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCAAGAAGTTTGTCT  770
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| 
Sbjct  534  GAAGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCATCAAGTTTGTCA  593

Query  771  TCTTTGA  777
            |||||||
Sbjct  594  TCTTTGA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36941106573


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5