BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59680.2 Length=994 Score E Sequences producing significant alignments: (Bits) Value Ahg898924 jgi|Araly1|898924|Al_scaffold_0005_2890 894 0.0 > Ahg898924 jgi|Araly1|898924|Al_scaffold_0005_2890 Length=600 Score = 894 bits (484), Expect = 0.0 Identities = 569/607 (94%), Gaps = 17/607 (3%) Strand=Plus/Plus Query 181 ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTC 60 Query 241 GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCATCACAACAACAACCAGAG 300 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 61 GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCAT--C-ACAACAACCAGAG 117 Query 301 AATT-TTCGTCCGTCTCGAAACCCTAGCGTCAACAGCAAGTCATCCAATCATAA-CCAAA 358 ||| |||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 118 -ATTCTTCGTCCGTCTCGAAACCCTAGCGTCAACAACAAGTCATCGAATCA-AAGCCAAA 175 Query 359 TTTATCACCAGCTGAGAAAATGCTCGTCTCTCAAGGTAGCTGCGAATTCTTTCACTAGGG 418 || |||||||||||||||||||||||||| | || ||||||||||||| |||||||||| Sbjct 176 TTCATCACCAGCTGAGAAAATGCTCGTCTTTGAAACTAGCTGCGAATTCGTTCACTAGGG 235 Query 419 TTTGCCTCTGCGCTCCGATTGGTCCATACGACGACGTTTTTCG-GATTCACGTCCCGCCG 477 |||| ||||||||||| || |||||||||||||||||||| || ||| ||||||||||| Sbjct 236 TTTGTCTCTGCGCTCCTATCGGTCCATACGACGACGTTTTCCGAAATT-ACGTCCCGCCG 294 Query 478 AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTA---T---GGAGACGGCAGTG 531 |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 295 AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTATGGTGACGGAGACGGCGGTG 354 Query 532 GCGGTGGCGA-CGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC 590 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 GCGGTGGC-AGCGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC 413 Query 591 GTTGAGGGAAAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATAATGga 650 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 414 TTTGAGGGAGAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATGATGGA 473 Query 651 gaatagaaagagagatcaaatggagattgtgaggaagagaaatcagatgaggaggaagaa 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GAATAGAAAGAGAGATCAAATGGAGATTGTGAGGAAGAGAAATCAGATGAGGAGGAAGAA 533 Query 711 gaaGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCAAGAAGTTTGTCT 770 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 534 GAAGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCATCAAGTTTGTCA 593 Query 771 TCTTTGA 777 ||||||| Sbjct 594 TCTTTGA 600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36941106573 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5