BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59690.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1 3009 0.0
> Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1
Length=1984
Score = 3009 bits (1629), Expect = 0.0
Identities = 1887/2007 (94%), Gaps = 35/2007 (2%)
Strand=Plus/Plus
Query 11 CAACAAGAAGAAGAAGAAAGCAAATTAATAGACAAATAAtctttcttctctggttgcttc 70
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CAAGAAGAAGAAGAAGAAAGCAAATTAATAGAC-AATAATCTTTCTTCTCTGGTTGCTTC 59
Query 71 tttttatttctttctctgg-aacagcttttctctgttactttacttctTTGAGAAACTCC 129
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||
Sbjct 60 TTTTTATTTCTTTCTCTGGAAACAGCTTTTCTCTGTTACTTTACTTCTTTCAGAAACCCC 119
Query 130 ATAATCAAAGAGGAGTTTTTGAGGTTGAAGCTGTTCCTCCTTGGTAAAACAGAGCAATTA 189
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATAATCAAAGAGAAGTTTTTGTGGTTGAAGCTGTTCCTCCTTGGTAAAACAGAGCAATTA 179
Query 190 TGCTAACTTGCGCCGTCTTTTCAAATCTTGACCATCATCAAAATCATCATTGAAAGGAAT 249
|||||| ||||||||||||| |||||||| ||| | |||||| ||| ||||||||| |||
Sbjct 180 TGCTAATTTGCGCCGTCTTTCCAAATCTTAACCTTTATCAAACTCACCATTGAAAGTAAT 239
Query 250 GTTCAAGAAATGGGGAAGAAAGGAAGTTGGTTTTCTGCAATCAAAAGGGTGTTCACACCA 309
|||| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 240 GTTCGAGAAATGGGCAAGAAAGGAAATTGGTTTTCTGCAATCAAAAGGGTTTTCACACCA 299
Query 310 CATTCCAAAGAGAAGCAGCTaagcaacaacaaccaagaaccagagataaagagtgaaaac 369
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 CATTCCAAAGAGAAGCAGCTAAGCAACAACAACCAAGAACCAGAGAGAAAGAGTGAAAAC 359
Query 370 aaagaaaagaagaagaaaggttttggaaagaaa-ctaaggaatggagaaaCCAATTCATT 428
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 360 AAAGAGAAGAAGAAGAAAGGTTTTGGAAA-AAAGCTAAGGAATGGAGAAACCAATTCATT 418
Query 429 TCTTCCCATTTTTAGACAGCCTAGTAGTATCGAAAAGATCTTGTCTGAAGCCGAACGAGA 488
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 419 TCTTCCCATTTTTAGACAGCCTAGTAGTATCGAAAAGATCTTGTGTGAAGCTGAACGAGA 478
Query 489 GCATAACCTTGTCTTTAGGCCACCAACTCCCACTGATCGAGCAAATTCATCATCAACCTC 548
|||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||
Sbjct 479 GCATAACCTTGTCTTTAGGCCACCAAGTCCCACGGATCGAACAAAGGCATCATCAACCTC 538
Query 549 TGTTGCATCTCC-TCTTGTTAGGCCTGCTTCTCCTAAAGTGCCTTCTCAAAGATATGTCT 607
|||| ||||||| || |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 539 TGTTCCATCTCCTTC-TGTTAGGCCTGCTTCTCCTAAAGTTCCTTCTCAGAGATATGTCT 597
Query 608 CTTCTCCAAAACCCATTTCCCCAAGAGTTGCTTACCCTCAAGTCCATTATCCGAAGCCCC 667
||||||||||||||||||| |||||| |||||| | | || | || || ||
Sbjct 598 CTTCTCCAAAACCCATTTCACCAAGACTTGCTT---C-C----CC----T-CG-AG-TCC 642
Query 668 CTTCTCCAAAGCCGCCTTCTCCAAGAGCGGTTTCGCCTAGGATTGTGC-AGCGACGTGAG 726
||||||| ||||||||||||||| ||||||||||||||| |||||||| | | |||||||
Sbjct 643 CTTCTCCGAAGCCGCCTTCTCCACGAGCGGTTTCGCCTAAGATTGTGCTA-CAACGTGAG 701
Query 727 TTTGTGCATAGACCAGAGCCAAGTCTATTGGTCAAAAATGCTTATGCAATTAAGATTCAA 786
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 702 TTTGTGCATAGACCAGAGCCAAGTCTACTGGTCAAAAATGCTTATGCAACAAAGATTCAA 761
Query 787 GCAGCTTTTAGAGGTTACATGGCAAGGAGGAGTTTCAGAGCTTTGAAAGGTCTAGTCAGG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GCAGCTTTTAGAGGTTACATGGCAAGGAGGAGTTTCAGAGCTTTGAAAGGTCTAGTCAGG 821
Query 847 CTTCAAGGAGTGGTAAGAGGACACAGCGTGAAGCGTCAAACGATGAATGCTATGAAGTAT 906
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTTCAAGGAGTGGTGAGAGGACACAGCGTGAAGCGTCAAACGATGAATGCTATGAAGTAT 881
Query 907 ATGCAGCTTTTAGTCCGAGTCCAAACACAAGTCCAGTCACGTCGCATCCAAATGCTCGAA 966
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 882 ATGCAGCTTTTAGTACGAGTCCAAACACAAGTCCAGTCACGTCGCATCCAAATGCTGGAA 941
Query 967 AACCGAGCTAGGAACGATAAAGATGACACGAAATTAGTCTCTAGTCGTATGTCTGACGAT 1026
|||||||||| |||||| ||||||||||||||||||| |||||| | | |||||| |||
Sbjct 942 AACCGAGCTAAGAACGACAAAGATGACACGAAATTAGCCTCTAGCCTTGCGTCTGAGGAT 1001
Query 1027 TGGGACGATAGCGTGCTGACAAAAGAAGAAAAAGATGTGAGGCTTCATAGGAAGATTGAT 1086
||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1002 TGGGACGATAGTGTGCTGACAAAAGAAGAAAAAGATGCGAGGCTGCATAGGAAGATTGAT 1061
Query 1087 GCAATGATCAAAAGAGAACGGTCCATGGCCTATGCTTATTCTCACCAGTTATGGAAAAAC 1146
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GCAATGATCAAAAGAGAACGTTCCATGGCCTATGCTTATTCTCACCAGTTATGGAAAAAC 1121
Query 1147 AGTCCAAAGTCTGCTCAGGACATTAGAACAAGTGGGTTCCCACTTTGGTGGAACTGGGTG 1206
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1122 AGTCCAAAGTCTGCTCAGGACATTATAACAAGTGGGTTCCCACTTTGGTGGAACTGGGTG 1181
Query 1207 GACCGGCAGAAGAATCAAAACCAACCGTTCAGGCTAACACCAACACGACCGAGCCTGAGC 1266
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1182 GACCGGCAGAAGAACCAAAACCAACCATTCAGGCTAACACCAACACGACCGAGCCCAAGC 1241
Query 1267 CCTCAGCCTCAATCTAGCAACCAAAACCATTTCAGGCTCAACAACAGTTTCGACACGTCA 1326
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1242 CCTCAGCCTCAATCTAGCAGCCAAAACCATTTCAGGCTCAACAACAGTTTCGACACTTCC 1301
Query 1327 ACACCCAATTCATCAAAATCCACATTCGTTACTCCATCTAGACCCATTCATACTCCGCAA 1386
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1302 ACACCCAATTCATCAAAATCCACATTCGTTACTCCATCTAGACCCATTCACACTCCGCAA 1361
Query 1387 CCATACAGTAGCAGCGTCTCAAGATACTCACGAGGAGGAGGACGAGCTACACAAGATTCT 1446
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1362 CCATACAGTAGCAGCGTCTCAAGATACTCACGAGGAGGAGGAAGAGCCACACAAGATTCT 1421
Query 1447 CCTTTTAAAGATGATGATAGCCTCACAAGCTGTCCTCCATTCTCAGCTCCAAGCTACATG 1506
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1422 CCTTTTAAAGATGATGATAGCCTCACAAGCTGCCCTCCATTCTCAGCTCCAAGCTACATG 1481
Query 1507 GCTCCAACAGTCTCAGCTAAAGCAAAACTAAGAGCAAACAGCAATCCAAAGGAGAGAATG 1566
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1482 GCTCCAACAGTCTCAGCTAAAGCAAAACTAAGAGCAAACAGTAATCTAAAGGAGAGAATG 1541
Query 1567 GACCGTACACCGGTCAGCACAAACGAGAAGAGACGAAGTTCGTTCCCTCTTGGTTCGTTC 1626
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1542 GACCGTACACCGGTCAGCACAAACGAGAAGAGACGGAGTTCGTTCCCTCTTGGTTCGTTC 1601
Query 1627 AAATGGAACAAAGGGTCATTGTTCATGAGCAACAACAGTAACAACAAGGGTCCAGGTTCT 1686
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1602 AAGTGGAACAAAGGGTCATTGTTCATGAGCAGCAACAGTAACAACAAGGGTCCAGGTTCT 1661
Query 1687 TCTTCTTCTGGTGCTGTGGTGCTTGAGAAGCACAAAACCCTCAAATCCGTTGGAAATTTG 1746
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TCTTCTTCTGGTGCTGTTGTGCTTGAGAAGCACAAAACCCTCAAATCCGTTGGAAATTTG 1721
Query 1747 AGTATTGATTCTACTGTTTCGATGCCTGCAACAATTGGGAGGAGGGCttttaacagattt 1806
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AGTATTGATTCTACGGTTTCGATGCCTGCAACAATTGGGAGGAGGGCTTTTAACAGATTT 1781
Query 1807 gcgtgatttgtttttcttcttt-ttttctgt---gaaaaaatctgacctttttttcCCAG 1862
||||||||| ||| | || ||| ||||||| ||||||| || |||| |||| |||
Sbjct 1782 GCGTGATTT-TTTAT-TT-TTTATTTTCTGAAACGAAAAAA-CTTTTCTTTCTTTCTCAG 1837
Query 1863 TTGATTCTTCATTGATTTGTTTATCTTACATCAATTTTATGAGTGCTGATGATTTTGAGT 1922
|||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1838 TTGATTCTTCTTTGATTTGTTTATCTTACATCAATTTTATGAGTGGTGATTATTTTGAGT 1897
Query 1923 GTTGTTT----GTGTTCTTGATTACGAATTTTACAGATGTAACATAATAAGAAAAAGTAA 1978
||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1898 GTTTTTTTTTTGTGTTCTTGATTACGAATTTTACAGATGTAACATAATAATAAAAAGTAA 1957
Query 1979 ACAACAAAAACAGAGGATTTGGATTGT 2005
|||||||||||||||||||||||||||
Sbjct 1958 ACAACAAAAACAGAGGATTTGGATTGT 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5