BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59700.1
Length=2143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938998 jgi|Araly1|938998|scaffold_503189.1 2976 0.0
Ahg939000 jgi|Araly1|939000|scaffold_503191.1 732 0.0
> Ahg938998 jgi|Araly1|938998|scaffold_503189.1
Length=2021
Score = 2976 bits (1611), Expect = 0.0
Identities = 1883/2014 (93%), Gaps = 19/2014 (1%)
Strand=Plus/Plus
Query 9 CACCAATGTCTCGTGAACTTATTATTCTCTGC-CAACCAATTCTTGTTCTGTTCCTTACT 67
|||||||||||||||||| ||||||||||| || | |||||||||||||||||||||
Sbjct 16 CACCAATGTCTCGTGAAC---TTATTCTCTGCAAAATC-ATTCTTGTTCTGTTCCTTACT 71
Query 68 CTGTTTTACAATTCTCATGGCTACTTCGTCTCACAAGGATCTGTAGGAATCGGCTTCAAC 127
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 72 CTGTTTTACAATTCTCATGGGTACTTCGTCTCACAAGGATCTGTAGGAATCGGCTTCAAC 131
Query 128 GGTTACTTCACTTTAACCAACACCACAAAACACACATTCGGTCAAGCTTTCGAAAACGAG 187
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 132 GGTTACTTCACTTTAACCAACACCACAAAACACACATTTGGTCAAGCTTTCGACAACGAG 191
Query 188 CACGTTGAAATCAAGAACTCATCGACAGGTGTCATCTCATCTTTCTCAGTCAACTTCTTC 247
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 192 CACGTTGAAATCAAGAACTCATCGACAGGTCTCATATCATCTTTCTCAGTCAACTTCTTC 251
Query 248 TTTGCGATCGTCCCTGAACATAACCAGCAAGGCTCACACGGTATGACTTTCGTCATCTCT 307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 252 TTTGCGATCGTCCCTGAACATAACCAGCAAGGCTCACACGGTATGGCTTTCGTCATCTCT 311
Query 308 CCCACAAGAGGCCTTCCCGGAGCTTCCTCCGATCAATACCTCGGAATCTTTAACAAAACA 367
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 312 CCCACAAGAGGTCTTCCCGGAGCTTCCTCCGATCAATACCTCGGAATCTTTAACGAAACA 371
Query 368 AACAACGGTAAAGCCTCGAATAACGTTATAGCTATCGAGTTAGATATTCATAAAGACGAA 427
|||||||||||| || ||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 372 AACAACGGTAAAATCTTGAATAACGTGATTGCTATCGAGTTAGATATACATAAAGACGAA 431
Query 428 GAGTTTGGAGATATTGATGATAATCATGTTGGGATTAATATTAACGGTTTGAGATCTGTT 487
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 432 GAGTTTGGAGATATTGATGATAATCATGTTGGGATTAACATTAATGGTTTGAGATCTGTT 491
Query 488 GCCTCTGCTTCTGCTGGTTACTATGATGATAAAGATGGAAGCTTTAAAAAACTTTCTTTG 547
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 492 GCCTCTGCTTCTGCTGGTTACTATGATGATGAAGATGGAAGCTTTATAAAACTTTCTTTG 551
Query 548 ATCAGCAGAGAGGTAATGAGGCTTTCCATCGTTTATAGTCA-ACCTGATCAACAGCTCAA 606
||||||||| |||||||||||||||| |||||||||||||| || ||| ||||||||||
Sbjct 552 ATCAGCAGAAAGGTAATGAGGCTTTCGATCGTTTATAGTCATTCC-GATAAACAGCTCAA 610
Query 607 TGTTACTTTATTCCCTGCTGAGATCCCTGTTCCGCCACTAAAACCGCTCTTGTCTTTGAA 666
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 611 TGTTACTTTATTCCCTGCTGAGATCCCTGTTCCACCACGAAAACCGCTCTTGTCTTTGAA 670
Query 667 CCGAGATCTCTCGCCGTATTTGCTTGAGAAAATGTATCTTGGATTCACTGCATCGACGGG 726
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CCGAGATCTCTCCCCCTATTTGCTTGAGAAAATGTATCTTGGATTCACTGCATCGACGGG 730
Query 727 GTCAGTTGGAGCAATTCATTACTTGATGGGTTGGTTAGTTAATGGTGTAATCGAGTATCC 786
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 731 TTCAGTTGGAGCAATTCATTACTTGATGGGTTGGTTTGTTAATGGAGTAATCGAGTATCC 790
Query 787 GAGATTGGAGCTTAGT---ATACCAGTCCTTCCTCCATATCCAAAGAAAACATCTAATAG 843
||||||||| ||| || |||||||||||||||||||||||||||||| | ||||||||
Sbjct 791 GAGATTGGACCTTGGTACAATACCAGTCCTTCCTCCATATCCAAAGAAATCGTCTAATAG 850
Query 844 AACGAAAACTGTTTTAGCCGTCTGCTTAACGGTATCTGTGTTTGCTGCGTTTGTCGCTTC 903
||| ||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 851 AACAAAAACGGTTTTAGCGGTCTGCTTAACTGTATCTGTGATTGCTGCGTTTGTCGCCTC 910
Query 904 GTGGATCGGTTTCGTCTTCTATTTGAGGCATAAGAAGGTTAAAGAGGTTCTTGAAGAATG 963
||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| |||||
Sbjct 911 TTGGATCGGTTTTGTCTTCTATTTAAGGCATAAGAAGGTTAAGGGGGTTCTTGAGGAATG 970
Query 964 GGAGATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GGAGATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGG 1030
Query 1024 TTTCAAGGAGAAACAACTTCTTGGTAAAGGAGGCTTTGGTCAAGTCTATAAAGGAACACT 1083
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1031 TTTCAAGGAGAAACAACTTCTTGGGAAAGGAGGATTTGGTCAAGTCTACAAAGGAACACT 1090
Query 1084 TCCGGGTTCTGATGCAGAGATCGCTGTGAAGCGGACTTCTCATGATTCAAGACAAGGGAT 1143
|||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1091 TCCGGGATCTAATGCAGAGATCGCTGTCAAACGGACTTCTCATGATTCAAGACAAGGGAT 1150
Query 1144 GAGCGAGTTTCTAGCCGAGATATCGACCATTGGTCGTCTCAGACATCCAAATTTAGTCAG 1203
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1151 GAGCGAGTTTCTAGCTGAGATATCGACCATTGGGCGTCTCAGACATCCTAATTTAGTCAG 1210
Query 1204 GCTTTTAGGATACTGTAGGCATAAAGAGAATCTCTACTTGGTGTATGACTATATGCCTAA 1263
|||||| || || ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1211 GCTTTTGGGGTATTGTAGGCATAAAGAGAATCTCTACTTGGTTTATGACTTTATGCCTAA 1270
Query 1264 TGGAAGCCTTGACAAGTATCTAAACCGTAGCGAGAATCAAGAACGGCTTACTTGGGAACA 1323
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1271 TGGAAGCCTTGACAAGTATCTAAACCGTAATGAGAATCAAGAACGGCTGACTTGGGAACA 1330
Query 1324 ACGTTTCAGGATCATCAAAGATGTTGCAACTGCTCTACTACACCTGCATCAAGAATGGGT 1383
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1331 ACGTTTCAAGATCATCAAAGACGTTGCAACTGCTCTACTACACCTGCATCAAGAATGGGT 1390
Query 1384 ACAAGTCATCATTCATCGAGATATCAAACCAGCTAATGTTTTAATCGACAATGAAATGAA 1443
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 1391 ACAAGTCATTATTCATCGAGATATCAAACCGGCTAATGTTTTAATCGACCAGGAAATGAA 1450
Query 1444 TGCGAGGCTCGGGGATTTCGGACTGGCGAAACTGTATGATCAGGGATTCGATCCTGAAAC 1503
|||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||
Sbjct 1451 TGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATGATCAGGGATTTGATCCTGTGAC 1510
Query 1504 ATCTAAAGTAGCGGGAACATTCGGATATATCGCACCAGAGTTTCTAAGAACAGGAAGAGC 1563
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1511 ATCTAAAGTAGCAGGAACATTCGGGTATATCGCACCAGAGTTTCTAAGAACAGGAAGAGC 1570
Query 1564 AACCACAAGCACTGATGTTTACGCCTTTGGGTTGGTAATGCTTGAAGTAGTGTGTGGTAG 1623
||||||||||||||||| ||||||||||||||| || ||||||||||| || ||||| ||
Sbjct 1571 AACCACAAGCACTGATGCTTACGCCTTTGGGTTAGTTATGCTTGAAGTCGTTTGTGGGAG 1630
Query 1624 AAGGATAATTGAGAGACGTGCAGCA-GAAAATGAAGAATATCTTGTGGATTGGATCTTAG 1682
|||| | |||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1631 AAGGCTGATTGAGCGACGTGCA-CAAGAAAATGAAGAATATCTTGTGGACTGGATCTTAG 1689
Query 1683 AGCTTTGGGAAAATGGGAAAATTTTCGATGCAGCAGAGGAAAGTATACGTCAAGAACAAA 1742
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 1690 AGCTTTGGGAAAATGGGAAAATTTTCGATGCGGCAGAAGAAAGTATACGTCAAGAAGAAA 1749
Query 1743 ACAGGGGACAAGTTGAGCTTGTTTTGAAGCTAGGTGTGTTGTGTTCGCATCAAGCTGCAT 1802
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1750 ACAGGGGACAACTTGAGCTTGTTTTAAAGCTCGGTGTGTTGTGTTCGCATCAAGCTGCAT 1809
Query 1803 CGATAAGACCGGCTATGAGTGTGGTAATGAGGATTTTGAATGGAGTTTCACAGCTACCAG 1862
|||||||||| |||||||||| || ||| | ||||||||||||||||||||||| || |
Sbjct 1810 CGATAAGACCAGCTATGAGTGCAGTTATGCGAATTTTGAATGGAGTTTCACAGCTTCCGG 1869
Query 1863 ATAATCTTCTTGATGTTGTAAGGGCTGAGAAATTTAGAGAATGGCCTGAGACATCAATGG 1922
||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1870 ATAATCTTCTTGACATTGTAAGGGCTGAGAAAATTAGAGAATGGCCTGAGACGTCAATGG 1929
Query 1923 AATTACTACTACTTGATGTGAATACATCGAGTTCATTGGAGTTAACCGACTCTTCTTTTG 1982
|| | ||||||||||||||||| | || ||| |||||||||||||| |||||| || |
Sbjct 1930 AA--A-TACTACTTGATGTGAATTCCTCTAGTACATTGGAGTTAACCTACTCTT-TT--G 1983
Query 1983 TCTCCCACGGCCGCTGAAA-TTTTAAGTTTACCA 2015
|||||||||| |||||||| ||||||||||||||
Sbjct 1984 TCTCCCACGGACGCTGAAAGTTTTAAGTTTACCA 2017
> Ahg939000 jgi|Araly1|939000|scaffold_503191.1
Length=868
Score = 732 bits (396), Expect = 0.0
Identities = 525/587 (89%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 1303 AGAACGGCTTACTTGGGAACAACGTTTCAGGATCATCAAAGATGTTGCAACTGCTCTACT 1362
|||| |||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 284 AGAAAGGCTGACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 343
Query 1363 ACACCTGCATCAAGAATGGGTACAAGTCATCATTCATCGAGATATCAAACCAGCTAATGT 1422
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||
Sbjct 344 GCACCTGCATCAAGAATGGGCACAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 403
Query 1423 TTTAATCGACAATGAAATGAATGCGAGGCTCGGGGATTTCGGACTGGCGAAACTGTATGA 1482
| | |||||| | || ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 404 TCTCATCGACCACGATATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATGA 463
Query 1483 TCAGGGATTCGATCCTGAAACATCTAAAGTAGCGGGAACATTCGGATATATCGCACCAGA 1542
||||||||| |||||| | ||||| | ||||||||||||||| || ||||||||||||||
Sbjct 464 TCAGGGATTTGATCCTCAGACATCGAGAGTAGCGGGAACATTAGGGTATATCGCACCAGA 523
Query 1543 GTTTCTAAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCCTTTGGGTTGGTAAT 1602
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 524 GTTTATTAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCATTTGGGTTGGTAAT 583
Query 1603 GCTTGAAGTAGTGTGTGGTAGAAGGATAATTGAGAGACGTGCAGCA-GAAAATGAAGAA- 1660
||||||| |||| |||||||||||| | || || ||||||||| | ||||||||||||
Sbjct 584 GCTTGAAATAGTTTGTGGTAGAAGGTTGATAGACCGACGTGCAG-AGGAAAATGAAGAAG 642
Query 1661 TATCTTGTGGATTGGATCTTAGAGCTTTGGGAAAATGGGAAAATTTTCGATGCAGCAGAG 1720
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 643 TA-CTTGTGGATTGGATCTTAGAGCTTTGGGAACATGGGAACATTTTCGATGCGGCAGAG 701
Query 1721 GAAAGTATACGTCAAGAACAAAACAGGGGACA-AGTTGAGCTTGTTTTGAAGCTAGGTGT 1779
||||||| |||||||||||||||||||||| | | ||||||| |||||||||||||| ||
Sbjct 702 GAAAGTACACGTCAAGAACAAAACAGGGGAGAGA-TTGAGCTGGTTTTGAAGCTAGGGGT 760
Query 1780 GTTGTGTTCGCATCAAGCTGCATCGATAAGACCGGCTATGAGTGTGG-TAATGAGGATTT 1838
||||||| |||||||| ||| ||| |||||||||| ||||||||||| | ||| ||| |
Sbjct 761 GTTGTGTGCGCATCAATCTGAATCAATAAGACCGGATATGAGTGTGGGTTATGCTGATCT 820
Query 1839 TGAATGGAGTT-TCACAGCTACCAGATAATCTTCTTGATGTTGTAAG 1884
||||||| ||| | ||||| |||||||||||||||||||| |||||
Sbjct 821 TGAATGGTGTTGTG-CAGCTTCCAGATAATCTTCTTGATGTAGTAAG 866
Score = 248 bits (134), Expect = 1e-64
Identities = 145/150 (97%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 907 GATCGGTTTCGTCTTCTATTTGAGGCATAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGA 966
||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 137 GATCGGTTTCGTCTTTTATTGGAGGCACAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGA 196
Query 967 GATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTT 256
Query 1027 CAAGGAGAAACAACTTCTTGGTAA-AGGAG 1055
||||||||||||||||||||| || |||||
Sbjct 257 CAAGGAGAAACAACTTCTTGG-AAGAGGAG 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80637048665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5