BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59710.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486437 jgi|Araly1|486437|fgenesh2_kg.5__2429__AT3G59710.1 1369 0.0
> Ahg486437 jgi|Araly1|486437|fgenesh2_kg.5__2429__AT3G59710.1
Length=1143
Score = 1369 bits (741), Expect = 0.0
Identities = 843/893 (94%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 51 TTACGGCATTATTCACGAGTGGTGGTCGGAAGAAACAACAGCGGTCGTGACCGGAGCAAA 110
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 48 TTACGGCATTATTCACGAATGGTGGTCGGAAGAAACAACAGCGGTGGTGACCGGAGCAAA 107
Query 111 CAAAGGTATAGGTTTTGCGGTGGTGAAGAGGTTATTAGAGCTTGGACTAACTGTAGTTTT 170
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 108 CAAAGGTATAGGCTTTGCGGTGGTGAAGAGGTTATTAGAGCTTGGACTAACTGTCGTTTT 167
Query 171 AACTGCCCGAAACGCCGAAAATGGAAGCCAAGCCGCTGAATCCCTCCGCCGCATTGGCTT 230
||| |||||||||||||||||||||| ||||||||| || |||||||||| || ||||||
Sbjct 168 AACCGCCCGAAACGCCGAAAATGGAATCCAAGCCGCCGATTCCCTCCGCCTCACTGGCTT 227
Query 231 TGGAAACGTTCATTTTTGCTGCCTCGACATCTCCGATCCTTCTTCCATCGCCGCGTTCGC 290
| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 228 TAGAAACGTTCATTTTGGCTGCCTCGACATCTCCGATCCTTCTTCCATCGCGGCCTTCGC 287
Query 291 CTCTTGGTTCGGTCGCAACTTAGGAATACTCGACATTCTGGTGAACAATGCCGCCGTTTC 350
||| |||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 288 CTCCTGGTTCCGTCACAACTTCGGAGTACTCGACATTCTGGTGAACAATGCGGCCGTTTC 347
Query 351 ATTTAACGCGGTGGGCGAGAATTTAATCAAAGAGCCAGAGACAATCATCAAGACCAATTT 410
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 348 ATTTAACGCGGTAGGCGAGAATTTAATCAATGAGCCAGAGACAATTATCAAGACCAATTT 407
Query 411 CTACGGTGCCAAGCTTTTAACGGAGGCGCTTTTGCCGTTGTTTCGGCGTTCCGTCTCCGT 470
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTACGGTCCCAAGCTTTTAACCGAGGCGCTTTTGCCGTTGTTTCGGCGTTCCGTCTCCGT 467
Query 471 TAGTCGCATCCTTAACATGAGTTCAAGGCTTGGCACATTAAATAAACTGAGAAGCCCTAG 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TAGCCGCATCCTTAACATGAGTTCAAGGCTTGGCACATTAAATAAACTGAGAAGCCCTAG 527
Query 531 TATAAGACGAATCCTAGAAAGTGAAGACCTTACCAATGAACAAATCGATGCGACATTGAC 590
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 528 TATAAGACGAATCCTAGAGAGTGAAGACCTTACCAATGAACAAATCGATGCGACGGTGAC 587
Query 591 TCAATTTCTGCAGGACGTGAAGAGCGGGACTTGGGAGAAGCAAGGATGGCCGGAGAACTG 650
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 588 TCAATTTCTGCAGGACGTGAAAAGCGGGACTTGGGAGAAGCAAGGATGGCCAGAGAACTG 647
Query 651 GCCGGACTACGCCATCTCAAAGTTGGCCTTAAACGCTTACTCTAGGGTTTTGGCTCGACG 710
||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 648 GCCAGACTACGCCATCTCAAAGATGGCCTTAAACGCGTACTCGAGGGTTTTGGCTCGACG 707
Query 711 TTACGACGGCAAAAAACTGAGTGTGAATTGTTTATGCCCTGGTTTCACTCGTACGTCTAT 770
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTACGACGGCAAAAAACTAAGTGTGAATTGTTTATGCCCTGGTTTCACTCGTACGTCTAT 767
Query 771 GACCGGTGGTCAGGGGACTCACACGGCGGATGAGGCTGCTGCCATTGTAGCCAAGTTGGT 830
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 768 GACCGGTGGTCAGGGGACTCACACGGCGGATGAGGCTGCTGCCACTGTAGCCAAGTTGGT 827
Query 831 GT-TGCTTCCTCCGGAGAAGCTGGCTACCGGAAAGTTCTATATATGCGTAGAGTCTAA-A 888
| || ||||||||||||||||| || |||||||||||||||||||| ||||| |||| |
Sbjct 828 -TCTGATTCCTCCGGAGAAGCTGACTTCCGGAAAGTTCTATATATGCTTAGAGCCTAAGA 886
Query 889 AAACTTATTTCCAAGTTGTGACTCTATTATAGCTTTCTTCACCTGCACGCATA 941
||| ||||| |||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 887 AAA-TTATTGCCAAGTTGTGACTCAATTATAGCTTTCTTCACATACACGCATA 938
Score = 163 bits (88), Expect = 2e-39
Identities = 123/139 (88%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 1035 TTGATAAAAACAATGAAATTAGGGTTTCTTCTTCTTCCTCTGCAGCCGCTTCTGCTTCTC 1094
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 988 TTGATAAAAATAATGAAATTAGGGTTTCTTCTTCTTCCTCCGCAGCCGCTTCTGTTTCTT 1047
Query 1095 CTATATAAATAAGTAAAGGCTTGGAC----A-CTATCAATCATCTTCAAGTCCGATTCAA 1149
|||||||||| |||||||||||||| | | ||||||||||| ||||| |||||| |
Sbjct 1048 CTATATAAATCAGTAAAGGCTTGGATTTTTAACAATCAATCATCTACAAGTTCGATTCCA 1107
Query 1150 AGTCGTAGTTTCTTTTCTT 1168
|||| ||||||||||||||
Sbjct 1108 AGTCCTAGTTTCTTTTCTT 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5