BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59760.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977 2052 0.0
Ahg935291 jgi|Araly1|935291|scaffold_403279.1 1074 0.0
> Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977
Length=1314
Score = 2052 bits (1111), Expect = 0.0
Identities = 1244/1305 (95%), Gaps = 22/1305 (2%)
Strand=Plus/Plus
Query 72 ATGGTGGCGATGATCATGGCTTCAAGGTTTAACCGGGAAGCTAAGCTCGCATCTCAAATC 131
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGATGATCATGGCTTCAAGGTTTAACCGCGAAGCTAAGCTCGCATCTCAAATC 60
Query 132 TTGTCTACACTTTTGGGAAACCGAAGCTGCTACACATCCATGGCCGCCACATCTTCCTCT 191
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 61 TTGTCTACACTTTTGGGAAAGCGAAGCTGCAACACATCCATGGCCGCAACATCTTCCTCT 120
Query 192 GCTTTACTTCTTAATCCGTTGA---cttcttcttcttcttcttctactctccgtcgtttc 248
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 121 GCTTTACTCCTTAATCCGTTGACTTCTTCTTCTTCTTCTTCTTCTAGTCTCCGTCGTTTC 180
Query 249 agatgctcgccagagatctcttctctctccttctcctccg--c-t-t-----c-t--gat 296
||||||||||| |||||||||||||||||||||||||||| | | | | | |||
Sbjct 181 AGATGCTCGCCGGAGATCTCTTCTCTCTCCTTCTCCTCCGCTCGTGTGACACCTTCAGAT 240
Query 297 ttctctctAGCGATGAAGAGGCAGAGTCGGAGTTTTGCTGATGGTTCGGAACGAGATCCG 356
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 241 TTCTCTCTAGCGATGAAGAGGCAGAGTCGGAGTTTTGCGGATGGCTCGGAACGAGATCCG 300
Query 357 TCTGTTGTGTGTGAGGCTGTTAAGCGCGAGACTGGACCTGATGGACTCAACATCGCTGAC 416
|||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 301 TCTGTTGTCTGTGAGGCTGTTAAGAGCGAGACTGGAGCTGATGGACTCAAGATCGCTGAT 360
Query 417 AATGTGTCTCAGCTCATTGGGAAAACTCCTATGGTGTACTTGAACAGTATAGCAAAAGGT 476
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 361 AATGTGTCTCAGCTCATTGGGAAAACTCCTATGGTCTACTTGAATAGTATAGCAAAGGGT 420
Query 477 TGTGTAGCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTGTAGCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGAT 480
Query 537 AGGATTGGGTACAGTATGGTTACTGATGCTGAGCAAAAAGGATTTATATCACCTGGAAAG 596
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 481 AGGATTGGGTACAGTATGGTTACTGATGCTGAGCAAAAAGGACTTATCGCACCTGGAAAG 540
Query 597 AGTGTTCTTGTGGAACCTACAAGTGGAAACACGGGTATTGGCCTAGCATTCATCGCTGCT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTGTTCTTGTGGAACCTACAAGTGGAAACACGGGTATTGGCCTAGCATTCATCGCTGCT 600
Query 657 TCAAGGGGCTATAGACTTATCTTGACAATGCCAGCATCCATGAGTATGGAAAGAAGGGTT 716
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 601 TCAAGAGGCTATAGACTTATCTTGACAATGCCATCGTCCATGAGTATGGAAAGAAGGGTT 660
Query 717 CTTTTAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTTAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGA 720
Query 777 GCGGTTCAGAAGGCTGAAGAGATCTTGAAAAACACTCCTGATGCATACATGCTCCAACAG 836
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 721 GCGGTTCAGAAGGCTGAAGAAATTTTGAAAAACACTCCTGATGCCTACATGCTCCAACAG 780
Query 837 TTTGACAACCCTGCAAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGAT 896
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTGACAACCCTGCGAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGAA 840
Query 897 GATACAAAGGGCAAGGTGGATATCTTTGTTGCAGGAATTGGAACTGGTGGAACTATCACT 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 GATACAAAGGGCAAGGTGGATATATTTGTTGCAGGAATTGGAACTGGTGGAACTATCACT 900
Query 957 GGTGTTGGTCGATTTATTAAAGAGAAAAATCCCAAAACGCAGGTTATTGGTGTAGAACCC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTGTTGGTCGATTTATTAAAGAGAAAAATCCCAAAACGCAGGTTATTGGTGTAGAACCC 960
Query 1017 ACCGAAAGCGATATACTTTCTGGTGGCAAACCGGGACCTCACAAGATTCAAGGAATTGGA 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 ACCGAAAGCGATATACTTTCTGGTGGCAAACCAGGACCTCACAAGATTCAAGGAATTGGA 1020
Query 1077 GCTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGTCATAGCGATTTCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGTCATAGCGATTTCA 1080
Query 1137 AGTGAGGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTTGGT 1196
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 AGTGAAGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTCGGT 1140
Query 1197 ATATCATCTGGAGCTGCAGCTGCTGCTGCAATCAAGGTGGCTAAGAGACCTGAGAATGCT 1256
||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||
Sbjct 1141 ATATCATCTGGAGCTGCTGCTGCTGCTGCAATCAGGGTCGCGAAGAGACCTGAGAATGCT 1200
Query 1257 GGAAAACTCATAGCTGT---TGTTTTCCCGAGCTTCGGGGAGAGATATCTATCGACCCCG 1313
||||||||||||||||| ||||||| | |||||||||| |||||||||| ||||||
Sbjct 1201 GGAAAACTCATAGCTGTAAGTGTTTTC--G--CTTCGGGGAGCGATATCTATCAACCCCG 1256
Query 1314 CTGTTCCAGTCTATCCGGGAAGAGGTGGAGAAAATGCAGCCTGAG 1358
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTGTTCCAGTCTATCCGGGAAGAGGTGGAGAAAATGCAGCCTGAG 1301
> Ahg935291 jgi|Araly1|935291|scaffold_403279.1
Length=1302
Score = 1074 bits (581), Expect = 0.0
Identities = 826/944 (88%), Gaps = 18/944 (2%)
Strand=Plus/Plus
Query 424 CTCAGCTCATTGGGAAAACTCCTATGGTGTACTTGAACAGTATAG-CAAAAGGTTGTGTA 482
||||||| |||||||||||||| |||||||||||||||| | ||| | || || |||||
Sbjct 303 CTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTC-AAGGGCTGTGTT 361
Query 483 GCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGATAGGATT 542
|||| | ||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 362 GCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGATT 421
Query 543 GGGTACAGTATGGTTACTGATGCTG-AGCAAAAAGGATTTATATCACCTGGAAAGAGTGT 601
||||| |||||| |||||||||||| || | |||||| ||||| ||||||||||||||||
Sbjct 422 GGGTATAGTATGATTACTGATGCTGAAG-AGAAAGGACTTATAACACCTGGAAAGAGTGT 480
Query 602 TCTTGTGGAACCTACAAGTGGAAACAC-GGGTATTGGCCTAGCATTCATCGCTGCTTCAA 660
|||||||||| |||| ||||||||||| ||| |||||||| |||||||| ||||||||||
Sbjct 481 TCTTGTGGAATCTACGAGTGGAAACACAGGG-ATTGGCCTTGCATTCATTGCTGCTTCAA 539
Query 661 GGGGCTATAGACTTATCTTGACAATGCCAGCATCCATGAGTATGGAAAGAAGGGTTCTTT 720
||||||| |||||||||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 540 AAGGCTATAAACTTATCTTGACGATGCCCGCATCCATGAGTTTGGAAAGGCGGGTTCTTT 599
Query 721 TAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGAGCGG 780
| | ||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 600 TGAGGGCATTTGGAGCTGAGCTTGTATTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 659
Query 781 TTCAGAAGGCTGAAGAGATCTTGAA-AAACACTCCTGATGCATACATGCTCCAACAGTTT 839
|||||||||||||||| |||||||| ||| ||||| || | || |||||||||||||||
Sbjct 660 TTCAGAAGGCTGAAGAAATCTTGAAGAAA-ACTCCCAATTCCTATATGCTCCAACAGTTT 718
Query 840 GACAACCCTGCAAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGATGAT 899
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 719 GACAACCCTGCCAATCCCAAGATTCATTACGAGACGACTGGTCCTGAGATCTGGGAAGAT 778
Query 900 ACAAAG-GGCAAGGTGGATATCTTTGTTGCAGGAATTGGAACTGGTGGAACTATCACTGG 958
|| ||| ||||| | ||||| || ||||| || ||||||||||||||||||||||||||
Sbjct 779 AC-AAGAGGCAAAATTGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGG 837
Query 959 TGTTGGTCGATTTATTAAAGAGA-AAAATCCCAAAACGCAGGTTATTGGTGTAGAACCCA 1017
|||||||||||| |||||||| | |||| || || | |||||||||||||||||||||
Sbjct 838 TGTTGGTCGATTCATTAAAGAAAGAAAA-CCTGAATTGAAGGTTATTGGTGTAGAACCCA 896
Query 1018 CCGAAAGCGATATACTTTCTGGTGGCAAACCGGGACCTCACAAGATTCAAGGAATTGGAG 1077
| ||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 897 CGGAAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGGG 956
Query 1078 CTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGT-CATAGCGATTTCA 1136
|||||||| |||||||||||||||||| | ||| | |||||| | ||||||||||||
Sbjct 957 CTGGATTTGTACCTAAGAATTTGGATCTGGCTATTGTAGATGAA-TACATAGCGATTTCC 1015
Query 1137 AGTGAGGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTTGGT 1196
|||||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct 1016 AGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGT 1075
Query 1197 ATATCATCTGGAGCTGCAGCTGCTGCTGCAATCAAGGTGGCTAAGAGACCTGAGAATGCT 1256
||||| ||||||||||| ||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1076 ATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCC 1135
Query 1257 GGAAAACTCATAGCTGTTGTTTTCCCGAGCTTCGGGGAGA-GATATCTATCGACCCCGCT 1315
|| ||||||||||||||||| ||||||||||||||||| | | || || ||||||| |||
Sbjct 1136 GGGAAACTCATAGCTGTTGTGTTCCCGAGCTTCGGGGA-ACGTTACCTCTCGACCCAGCT 1194
Query 1316 GTTCCAGTCTATCCGGGAAGAGGTG-GAGAAAATGCAGCCTGAG 1358
|||||||| || || |||||| || ||| ||||||||||||||
Sbjct 1195 TTTCCAGTCGATTCGAGAAGAG-TGCGAGCAAATGCAGCCTGAG 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5