BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59780.1
Length=2504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898931 jgi|Araly1|898931|Al_scaffold_0005_2897 1363 0.0
> Ahg898931 jgi|Araly1|898931|Al_scaffold_0005_2897
Length=2073
Score = 1363 bits (738), Expect = 0.0
Identities = 816/854 (96%), Gaps = 3/854 (0%)
Strand=Plus/Plus
Query 915 TCACTTCCTGATGCGAAAGCTAGCGTTGATGACTTTTCTTCTGGGGTCAAGGAGTCCTTC 974
|||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639
Query 975 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCG 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCT 699
Query 1035 TCTGTGACATCCATTACAAAGAATGCTTCTGAAGTTGTAGATAG-TGCAGTTAACAGAGC 1093
||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 700 TCTGTGACATCTATTACAAAGAATGCTTCTGAAGTTGTAGAT-GATGCATTTAACAGAGC 758
Query 1094 GTTTTCTACGCTAGACCAAACGGGAGATGTAGCTGGAGACAAGTTTTCGAGTTTTTCTAC 1153
||||||| || | |||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 759 GTTTTCTGCGGTCGACCAAACAGGAGATATAGCTGGAGACAAGTTTTCAAGTTTTTCTAC 818
Query 1154 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGCTGAGGCAATC 1213
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 819 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGTTGAGGCAATC 878
Query 1214 AGTTAGTCTTGGAGAGAGATCTGTAACAAATGGAGTTTCTTTTGTTGTGTACTCTTATGG 1273
||||||| ||| ||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 879 AGTTAGTATTGCAGAAAGTTCTGTTACAAATGGAGTTTCTTTTGTTGTTTACTCTTATGG 938
Query 1274 ATCAGCAAAAGAATTACTTCCTCCAGATGTAAAGAGTGCCCTTAACTCGTCAGAAGATGT 1333
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 939 GTCAGCAAAAGATTTACTTCCTCCAGATGTTAAGAGTGCCCTTAACTCGTCAGAAGATGT 998
Query 1334 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTATTGCAGCAGGTATCTGTTGCCATTGG 1393
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 999 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTGTTGCAGCAGGTATCTGTTGCCATTGG 1058
Query 1394 AGGTTTGGAGAGAAATATCGGTTTGGATCCAGATGACCCAATCCTTCACCTTTTTCTCTT 1453
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1059 AGGTTTGGAGAGAAATTTCGGTTTGGATCCAGATGACCCAATCATTCACCTTTTTCTATT 1118
Query 1454 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1178
Query 1514 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGACAAGTCAGTGCT 1573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1179 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGAAAAGTCAGTGCT 1238
Query 1574 CATAGATGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATACCTGATCTGCGGAGATC 1633
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1239 CATAGACGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATCCCTGATCTGCGGAGATC 1298
Query 1634 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGATGTCAAACGGCT 1693
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1299 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGCTGTCAAACGGCT 1358
Query 1694 ACTGAAAGGTGGAAGTGAAGTAGATGATATCTTGACAGCAGTAATCATCAAGAACTTGAA 1753
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1359 ACTGAAAGGTGGAAGTGAGGTTGATGATATTTTGACAGCAGTAATCATCAAGAACTTGAA 1418
Query 1754 AATAGTTCAG-GAC 1766
|| ||||||| |||
Sbjct 1419 AACAGTTCAGAGAC 1432
Score = 562 bits (304), Expect = 4e-159
Identities = 385/423 (91%), Gaps = 9/423 (2%)
Strand=Plus/Plus
Query 324 ATGTTTCCCCTGTGCTCGGCCACAAGCTGCCGTTACCATTCTCAGATTTTATTTCCTGGC 383
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 1 ATGTTTCCCCTGTGCTCAGCCGCAAGCTGCCATTACCATTCTCAGATTTTATTTCCTAGC 60
Query 384 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCAGGTGAC 443
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCTGGTGAC 120
Query 444 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCGTACCTCAAGCC 503
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCTTACCTCAAGCC 180
Query 504 ACTGGGAGTTTCTTGACCGGTACTATCGAAAAAACAGAACAACCAGTATCAACATTCGGA 563
|||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 181 ACTGGGAGTTTCTTCACCGGTACTATCGAAAAAGTAGAGCAACCAGTATCAACATTCAGA 240
Query 564 AGTTTGTGCCAGAATGAGTTGGACAGAATAAACTACATGGTTTATAACATGAGTGAAGCT 623
|||||||||||||||||||||||||||||| || | ||||| || |||||||||||
Sbjct 241 AGTTTGTGCCAGAATGAGTTGGACAGAATAGAC-----G-TTTATGACTTGAGTGAAGCT 294
Query 624 TTTGTAGCGAGTGATGAGGGACTGACATATGTAGAAAATGGAGAAGATGTGTTCCCTGTT 683
|||||||| |||||| ||||||| |||||||||| |||||||||||| |||||||||
Sbjct 295 ATTGTAGCGGGTGATGGGGGACTGGCATATGTAGA---TGGAGAAGATGTTTTCCCTGTT 351
Query 684 GAAGCTGTTGCAGCAGATGTTTCTCCTGTTGAAGCTGTTGTACCAGATGTTTCCCCCATT 743
|| |||| || |||||||||||| |||||||| |||| |||| |||||||||| || ||
Sbjct 352 GACGCTGCTGTAGCAGATGTTTCCCCTGTTGACGCTGCTGTAGCAGATGTTTCTCCTGTT 411
Query 744 GAA 746
|||
Sbjct 412 GAA 414
Score = 532 bits (288), Expect = 3e-150
Identities = 326/345 (94%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 2040 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCATCGGCCTTAGTCTGACTATATACCTA 2099
||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
Sbjct 1729 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCGTTGGCCTCGGTCTGACTATATACCAA 1788
Query 2100 CGACTTTCTTCATATGATGACTCCGAAGACTTCAAACAAGACGTCAGGCTGTTGCTTGCA 2159
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1789 CGACTTTCTTCATATGATGACTCTGAAGACTTCAAGGAAGACGTCAGGCTGTTGCTTGCA 1848
Query 2160 CCTGTGAAACTCGGAGCTCAGGCTTTCTCGTGGGCTGCAGGAAAACTAGAAACAAATGGT 2219
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1849 CCTGTGAGACTCGGAGCTCAGGCTTTCTCATGGGCTGCAGGAAAACTCGAAACAAATGGT 1908
Query 2220 GTTGGCCTCCCAACTTCGCCTTCTTCTTCAGATGTTCGAAGCCGGGTTTTGCAAGCTGCT 2279
||||| |||||||| || ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1909 GTTGGGCTCCCAACATCACCTTCGTCTTCAGATGTTAGAAGCCGGGTTTTGCAAGCTGCT 1968
Query 2280 GCTAAGCATGAATCGAAACCCTCTGATGAAACTTCTGAAAGTCTCCAAGATGCATCATCG 2339
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1969 GCTAAGCATGAATCTAAGCCCTCTGATGAAACATCTGAAAGTCTCCAAGATGCATCATCG 2028
Query 2340 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2384
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2073
Score = 294 bits (159), Expect = 2e-78
Identities = 187/200 (94%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 1846 AGAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGG-TACAGGAAGGTCTTCGTGTG 1904
|||| ||||||||| ||||||| || | ||||||||||| || |||||||||||||||||
Sbjct 1427 AGAGACCATACTTGGTGCAAGGAGGCTTTAGATCATGGGTTA-AGGAAGGTCTTCGTGTG 1485
Query 1905 AAAGAGCCAAAACCTGAGACAACACTTACCATCCTCAACGAGGAAGCTGAGGCGATTTTT 1964
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1486 AAAGAGCCGAAACCTGAGACAACACTTACCATCCTCAACGAAGAAGCTGAGGCGATTCTT 1545
Query 1965 GAGGACATAAATCCCTCTCCATTGCAACTATTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 2024
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1546 GAGGACATAAATCCTTCTCCATTGCAACTAGTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 1605
Query 2025 TTGTATGCTTTGTCTGAGTG 2044
|||||||||||||||| |||
Sbjct 1606 TTGTATGCTTTGTCTG-GTG 1624
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 849 TCACTTCCTGATGCGAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGCAGTCCTTC 908
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639
Query 909 AGCTCTTCACTT 920
||||||||||||
Sbjct 640 AGCTCTTCACTT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94387627110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5