BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59790.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898933 jgi|Araly1|898933|Al_scaffold_0005_2899 1807 0.0
> Ahg898933 jgi|Araly1|898933|Al_scaffold_0005_2899
Length=1182
Score = 1807 bits (978), Expect = 0.0
Identities = 1115/1183 (94%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCAACTAACGATGCTGAGACATTGGAAACTCAAGGAGAGGTTACAACCGCTATT 60
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGAGCCAACTAATGATGCTGAGACGGTGGAAACTCAAGGGGAGGTTACAACCGCTCTT 60
Query 61 TGGCCGTCATCTCAAATCCTCAAGACGACTATCGATATTCCGGGGACTCTCAGCCATGAC 120
| ||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 61 TTGCCGTCATCTCAAATGCTCAAGACGACTAACGATGTTCCGGAGACTCTCAGCCATGAC 120
Query 121 GGCAGATACATCCAGTACAATCTATTTGGGCATATCTTTGAACTCCCCGCAAAGTATAAG 180
|| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GGAAGATATATCCAATACAATCTATTTGGGCATATCTTTGAACTCACCGCAAAGTATAAG 180
Query 181 CCACCGATTAGGCCTATTGGCAGAGGTGCTTGTGGCATCGTTTGTTCGGCTGTGGACTCC 240
|||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 181 CCACCGATTATGCCTATTGGCAGAGGTGCTTGTGGCATTGTTTGTTCGGCTATGGACTCA 240
Query 241 GAGACCAATGAGAAGGTAGCAATAAAGAAAATAACGCAAGTATTTGATAACACTATCGAA 300
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 241 GAGACCAATGAGAAGGTAGCAATAAAGAAAATAATGCATGTATTTGATAACACTATCGAA 300
Query 301 GCAAAGAGAACTCTTCGTGAAATCAAGCTTCTTCGTCACTTCGATCATGAGAATATTGTT 360
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGAAGAGAATTCTCCGTGAAATCAAGCTTCTTCGTCACTTCGATCATGAGAATATTGTT 360
Query 361 GCAATCAGAGACGTAATCTTGCCTCCTCAGAGAGATTCATTCGAAGATGTTTACATTGTG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAATCAGAGACGTAATCTTGCCTCCTCAGAGAGATTCATTCGAAGATGTTTACATTGTG 420
Query 421 AATGAATTGATGGAGTTTGACCTTTATCGAACCTTAAAATCAGATCAAGAACTAACCAAA 480
||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 TATGAATTGATGGAGTTTGATCTTTATCGAACTTTAAAATCCGATCAAGAACTAACCAAA 480
Query 481 GATCATGGCATGTATTTCATGTACCAAATCCTGCGCGGATTAAAGTACATTCATTCAGCC 540
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GATCATTGCATGTATTTCATGTACCAAATCCTGCGCGGATTAAAGTACATTCATTCTGCC 540
Query 541 AATGTGCTACACAGAGATCTAAAACCAAGCAATCTCCTCTTGAGTACACAATGTGACTTA 600
||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 541 AATGTGCTACATAGAGATTTAAAACCAAGCAATCTCCTCTTGACTACACAATGCGACTTA 600
Query 601 AAGATTTGTGATTTCGGGCTCGCTCGTGCAACTCCTGAGAGTAATTTAATGACTGAGTAT 660
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 601 AAGATTTGTGATTTCGGGCTTGCTCGTGCCACTCCTGAGAGTAATTTAATGACTGAGTAT 660
Query 661 GTTGTCACAAGATGGTACCGTGCACCTGAGCTTCTGTTGGGCTCTTCTGACTATACCGCA 720
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 661 GTTGTCACAAGATGGTACCGTGCACCCGAGCTTCTGTTGGGCTCTTCTGATTATACCGCA 720
Query 721 GCAATAGATGTTTGGTCTGTTGGCTGTATTTTCATGGAAATAATGAACCGTGAACCGCTC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GCAATAGATGTTTGGTCTGTTGGCTGTATTTTCATGGAAATAATGAACCGCGAACCGCTC 780
Query 781 TTCCCGGGGAAAGATCAAGTTAATCAGCTTCGTTTGCTTCTGGAGCTCATTGGCACTCCA 840
||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 TTCCCCGGTAAAGATCAAGTTAATCAGCTTCGTTTGCTTATGGAGCTCATTGGCACTCCA 840
Query 841 TCTGAAGAAGAGCTTGGATCGTTGAGTGAATACGCTAAGCGATACATAAGGCAGCTTCCT 900
||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 841 TCTGAAGAAGAGCTTGGATCGTTAAGTGAATGTGCAAAGCGATACATAAGGCAGCTTCCT 900
Query 901 ACGCTTCCTCGCCAATCTTTCACTGAGAAATTCCCGAACGTGCCTCCCTTAGCAATAGAC 960
| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 901 AAGCTTCCTCGCCAATCTTTTTCTGAGAAATTCCCGAATGTGCCTCCTTTAGCAATAGAC 960
Query 961 TTGGTGGAGAAGATGCTAACATTTGATCCTAAACAGAGAATCTCAGTTAAAGAAGCACTT 1020
||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||
Sbjct 961 TTGGTGGAGAAGATGTTAACATTTGACCCTAGACAGAGAATCTCAGTTAAAGAAGCGCTT 1020
Query 1021 GCTCATCCATACCTTAGCTCGTTTCACGACATTACCGATGAACCAGAGTGCTCAGAGCCC 1080
|||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||
Sbjct 1021 GCTCATCCATACCTTAGCCCGCTTCACGACATTACAGATGAACCAGAGTGCCCAGAGCCC 1080
Query 1081 TTCAATTTCGATTTAGATGAACATCCATTCTCTGAGGAGCAGTTTAGAG-AGTTAATCTA 1139
||||| ||||| ||||||||||||| | || | ||||||||| ||| || ||||||||||
Sbjct 1081 TTCAACTTCGAGTTAGATGAACATCAACTCACAGAGGAGCAGATTA-AGGAGTTAATCTA 1139
Query 1140 CTGTGAAGCCCTAGCTTTCAACCCTGAAACCAGCAATGATTGA 1182
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTGTGAAGCCCTAGCTTTCAACCCTGAAACCAGCAATGATTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5