BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59800.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486444 jgi|Araly1|486444|fgenesh2_kg.5__2436__AT3G59800.1 1393 0.0
Ahg902397 jgi|Araly1|902397|Al_scaffold_0004_3047 292 2e-78
> Ahg486444 jgi|Araly1|486444|fgenesh2_kg.5__2436__AT3G59800.1
Length=882
Score = 1393 bits (754), Expect = 0.0
Identities = 845/888 (95%), Gaps = 9/888 (1%)
Strand=Plus/Plus
Query 18 TCTCTCTCTCGTTTGCTTTCTCTACAGATCCCTAAATCCTCTCCCTTTGGACCGTTAATC 77
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCGCTTGGTTTCTCTACAGATCCCTAAATCCTCTCCCTTTGGACCGTTAAT- 59
Query 78 CCCCAAACCCTAGATTTTA-CAAACAATTCCT--CTCAATCTCTCTAAATTCTCTTTCTC 134
|||||||||||||||| | | || || |||| ||||||||||||||| ||||||||||
Sbjct 60 TCCCAAACCCTAGATTTAATC-AA-AA-TCCTCACTCAATCTCTCTAAACTCTCTTTCTC 116
Query 135 CTGCAAGGAATTTGCGGACTGTTTCTTGTGGGGTAAATCTTCTATTAGCTATGGGGAAGA 194
||||||| |||||| ||||| ||||||||||| | || || ||| ||||||||||||||
Sbjct 117 CTGCAAGAAATTTGGGGACTTTTTCTTGTGGGTTTAA--TTGTATCAGCTATGGGGAAGA 174
Query 195 ATCAAGCTTACAAGGCTATGCAGAGATCTAGGGTTGGTTCCAGCTCCGCCCAGCCGGATG 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATCAAGCTTACAAGGCTATGCAGAGATCTAGGGTTGGTTCCAGCTCCGCCCAGCCGGATG 234
Query 255 AGGTTGAAGACGGAATGGTGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTT 314
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AAGTTGAAGACGGAATGGTGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTT 294
Query 315 TGGCTAGCCTCAAGACTACACATACTATTACCTGGGAAGAGTATAAGCAGAAGCAAAAGG 374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 TGGCTAGCCTCAAGACTACACATACTATTACATGGGAAGAGTATAAGCAGAAGCAAAAGG 354
Query 375 AAGAAGAATTGAAAAAGGGAGAACTTGAAGCAGATACCGATAAACTGATGCGTGAGTATA 434
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 355 AAGAAGAAATGAAAAAGGGAGAACTTGAAGCAGATACTGATAAACTGATGCGTGAGTATA 414
Query 435 GAGCTCAGCTGGATGCAGAAAGGTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTG 494
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGCTCAGCTCGATGCAGAAAGGTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTG 474
Query 495 ATAAGTCACgaaaagataagaaagacagagattcaaagaagaagaaaagcaaaaagagaa 554
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 475 ATAAGTCCCGTAAAGATAAGAAAGATAGAGATTCAAAGAAGAAGAAAAGCAAAAAGAGAA 534
Query 555 agCATTATTCGTCCTCAGAGTCGTCATCTAGCAGTGATGAAGATGAATCTAGAAGATCAA 614
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 535 AGCATTATTCATCCTCAGAGTCATCATCTAGTAGTGATGAAGATGAATCTAGAAGATCAA 594
Query 615 GATCAAGTTCGAAAAGATCAAAGAAGGAGAAGAAGCACAAGTCCAGCAGAGACAAACACT 674
|||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 595 GATCAAGTTCGAAACGATCAAAGAAGGATAGGAAGCACAAGTCCAGCAGAGACAAACACT 654
Query 675 CTAGCAAAAGTAAACACGAAACCGATGGCCCTGTACCACTCTCTAGATTCTTTGGCAATT 734
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 CTAGCAAAAGTAAAGACGAAACCGATGGCCCTGTACCACTCTCTAAATTCTTTGGCAATC 714
Query 735 TGAAGAATTGACAAAAGCAAAACTGCAAATGAACTATTACAAAGAGTAAGATTGTCTTCA 794
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGAAGAATTGACACAAGCAAAACTGCAAATGAACTATTACAAAGAGTAAGATTGTCTTCA 774
Query 795 ATCAAAATACTCAAAGTAGGATATGATTGCTTTCTTCCTTGTTGCAATGTTATATTTTTG 854
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATCAAAATACTCAAATTAGGATATGATTGCTTTCTTCCTTGTTGCAATGTTATATTTTTG 834
Query 855 ACAATAGCTCATGTATTAATATTTGTTGGATTGAAAGTCGCAATGATG 902
|||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 835 ACAATAGCTCATGTATTATTATTTGTTGGATTGAGAGTCGCAATAATG 882
> Ahg902397 jgi|Araly1|902397|Al_scaffold_0004_3047
Length=456
Score = 292 bits (158), Expect = 2e-78
Identities = 235/271 (87%), Gaps = 10/271 (4%)
Strand=Plus/Plus
Query 273 TGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCTAGCCTCAAGACTA 332
||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||
Sbjct 2 TGGATGGTTCATTTCATACACCAGAATGGCATGCTGCTCGTTTGGCCAGTCTCAAGACTA 61
Query 333 CACATACTATTACCTGGGAAGAGTATAAG-CAGAAGCAAAAGGAAGAAGAATTGAAAAAG 391
|||| ||| |||| |||||||| ||| || ||||||||||||||||||||| ||||||||
Sbjct 62 CACACACTCTTACTTGGGAAGAATAT-AGACAGAAGCAAAAGGAAGAAGAACTGAAAAAG 120
Query 392 GGAGAACTTGAAGCAGATACCGATAAACTGATGCGTGAGTATAGAGCTCAGCTGGATGCA 451
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GTTGAACTTGAAGCAGATACCGATATGTTGATGCGTGAGTATAGAGCTCAGCTGGATGCT 180
Query 452 GAAAG-GTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTGATA-AGTC-ACgaaaa 508
||||| | | |||| ||||| || ||||||||||||||||| |||| | || ||||||
Sbjct 181 GAAAGAG-CAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGCGATAGA-TCCACGAAA- 237
Query 509 gataagaaagacagagat-tcaaaga-agaa 537
|||| ||| || ||||| ||| ||| ||||
Sbjct 238 GATAGGAAGGAGAGAGAGCTCACAGATAGAA 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5