BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59810.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486445 jgi|Araly1|486445|fgenesh2_kg.5__2437__AT3G59810.1         643    0.0  


> Ahg486445 jgi|Araly1|486445|fgenesh2_kg.5__2437__AT3G59810.1
Length=469

 Score =  643 bits (348),  Expect = 0.0
 Identities = 440/480 (92%), Gaps = 23/480 (5%)
 Strand=Plus/Plus

Query  1    AAATAATAAAAGCCC-TTAGGACCGATTCGTTATTTCTTCGCTCTCTCTTTCTCTCTGTG  59
            ||||||||||| ||| |||||||| |||| |||||||||||      |  ||||||  ||
Sbjct  1    AAATAATAAAA-CCCTTTAGGACCAATTCATTATTTCTTCG------C--TCTCTC--TG  49

Query  60   TCTCGTACTCGAGTAGGT-CTCAGTTACGTAAAGGATCGAGCTT--AA-AAGATGAGTGG  115
            ||||| ||||||||||||  |||||||  |||||||||| ||||  || |||||||||||
Sbjct  50   TCTCGCACTCGAGTAGGTGGTCAGTTAAATAAAGGATCGTGCTTAGAAGAAGATGAGTGG  109

Query  116  AGTTGAAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTCCTCAAATCCATCCG  175
             |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  110  TGTTGGAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTCCTCAAATCCATCCG  169

Query  176  TGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGAGGCACTCTTACTTG  235
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  170  TGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGAGGCATTCTTACTTG  229

Query  236  TCTTGATGGATATATGAACATAGCAATGGAGCAGACGGAGGAGTATGTAAACGGGCAGCT  295
            ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  230  TCTTGATGGGTATATGAACATAGCAATGGAGCAGACAGAGGAGTATGTAAATGGGCAGCT  289

Query  296  CAAGAACAAATATGGTGACGCCTTTATCCGTGGAAACAACGTTCTTTACATCAGTACAGT  355
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  290  CAAGAACAAATATGGTGATGCCTTTATCCGTGGAAACAACGTTCTTTACATCAGTACGGT  349

Query  356  AAACATGACTGTAGCAGACGGAGCCTAGGCCCATCATGAT-CATCA--A-CAACAACAAC  411
            ||| ||||||||||| |||||||||||||||||||||||| |||||  | ||||||||||
Sbjct  350  AAAGATGACTGTAGCGGACGGAGCCTAGGCCCATCATGATACATCATCAGCAACAACAAC  409

Query  412  A---GTGGTCATGTTATGGCTGCCATTTTTGTTGTCTTCTTCTACCTCATATTAAAAGAG  468
            |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  ATCAGTGGTCATGTTATGGCTGCCATTTTTGTTGTCTTCTTCTACCTCATATTAAAAGAG  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5