BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59820.2
Length=2696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486447 jgi|Araly1|486447|fgenesh2_kg.5__2439__AT3G59820.2 4109 0.0
Ahg475653 jgi|Araly1|475653|fgenesh2_kg.2__783__AT1G65540.1 582 4e-165
Ahg936444 jgi|Araly1|936444|scaffold_500635.1 220 3e-56
> Ahg486447 jgi|Araly1|486447|fgenesh2_kg.5__2439__AT3G59820.2
Length=2514
Score = 4109 bits (2225), Expect = 0.0
Identities = 2394/2477 (97%), Gaps = 5/2477 (0%)
Strand=Plus/Plus
Query 94 TGTTCTCTTCTGGGAGATGTTCAGGTGATTCATCTTTGCACAACAAGGGATTTGACAAAA 153
|||||||||| ||||||||| | |||||||||||||||||||||||||| ||| ||||||
Sbjct 2 TGTTCTCTTCCGGGAGATGTCCTGGTGATTCATCTTTGCACAACAAGGGTTTTTACAAAA 61
Query 154 TGGCGTCAAGAGCGATCGTTAGGAGAAAGAATATCATTTCCGATTACTTGAATGTCTATG 213
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 TGGCGTCAAGAGCGATCGTTAGGAGAAAGAACATCATTTCCGATTACTTGAATGTCTATG 121
Query 214 CTCGCTCTATTCAGAGCTTTCAGTACATTGGAAACTCCTCTCAGACGGTTCATTCACATG 273
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CTCGCTCAATTCAGAGCTTTCAGTCCATTGGAAACTCCTCTCAGACGGTTCATTCACATG 181
Query 274 CTTACCACTCTGGTATTAACCGTCCTCCCGTGGAAACTAAACCTGTGACTGAACACAAGT 333
|||||||||||||| ||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 182 CTTACCACTCTGGTGTTAACCGTCCTCCTGTGGAAACTAAACGTGTGACCCAACACAAGT 241
Query 334 CCTTTACAAGAAGAGATGGTCTTCTATTGCTTTCTAGAAATGGATATTTCAATCGTAGCT 393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 242 CCTTTACAAGAAGAGATGGTCTTCTATTGCTTTCTAGAAACGGATATTTCAATCGTAGCT 301
Query 394 TTCATGGTTTTCACTCCTCGGG-ATTTGGTTATGGAAGTTCAGAAGTTGGTCCTTCTCTG 452
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 302 TTCATGGTTTTCACTCCTCGGGCA-TTGGTTATGGAAGTTCAGGAGTTGGTCCTTCTCTG 360
Query 453 GGGATGAGATACATGAGCCTATCCATTCGTAATGCTACTACAGTTGCAGCTAAGAAACCG 512
||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GGGATGAGATATGTAAGCCTATCCATTCGTAATGCTACTACAGTTGCAGCTAAGCAACCG 420
Query 513 GAAGAAGAGGATAAAAAGGTTGATGAGCTTGCTAAGAACAGGAAAGAAGCATCTCCTGAG 572
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAAGAGGATAAAAAAGTTGATGAGCTTGCTAAGAACAGGAAAGAAGCATCTCCTGAG 480
Query 573 GAATGTGATCAAGCTGTTGAAAGTCTGAGCAGTGTTAAAGCAAAGGCGAAAGCTAAACGT 632
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GAATGTGACCAAGCTGTTGAAAGTCTGAGCAGTGTTAAAGCAAAAGCGAAAGCTAAACGT 540
Query 633 CTTCAAGAATCCAAAAAGGTTGCTCGATCGATAGTACAGAGGGCATGGGCAATTGTTCTT 692
||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 541 CTTCAAGAATCGAAAAAGGTTGCTCGATCTATAGTACAGAGGGCATGGGGAATTGTTCTT 600
Query 693 AAGATAGGACCTGCTATAAAAGCTGTTGCCTCCATGAACAGGGCGGATTGGGCAAAAAAG 752
||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 AAGATAGGACCTGCTTTAAGAGCTGTTGCCTCCATGAGCAGGGCGGATTGGGCAAAAAAG 660
Query 753 CTCACTCACTGGAAACATGAGTTTGTATCAACATTGAAACATTATTGGCTGGGGACCAAA 812
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTCTCACTGGAAACAAGAGTTTGTATCAACATTGAAACATTATTGGCTGGGGACCAAA 720
Query 813 TTACTCTGGGCAGACACTAGAATCAGTTCAAGATTGCTGCTCAAGTTGGCTGGTGGAAAA 872
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTACTCTGGGCAGACACTAGAATCAGTTCAAGATTGCTGCTCAAGTTGGCTGGTGGAAAG 780
Query 873 AGTCTCTCCAGAAGAGAAAGGCAACAGCTAACTCGAACGACAGCTGATATCTTTAGATTA 932
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AGTCTCTCCAGAAGAGAAAGGCAACAGCTAACTCGAACAACAGCTGATATCTTTAGATTA 840
Query 933 GTGCCATTTGCAGTGTTCATCCTTGTGCCGTTTATGGAGTTTTTGCTCCCAGTTTTCTTG 992
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 GTGCCATTTGCTGTGTTCATCCTTGTGCCGTTTATGGAGTTTTTGCTGCCAGTTTTCTTG 900
Query 993 AAGCTCTTCCCTAATATGTTACCATCAACTTTCCAGGACAAGATGAAAGAAGAGGAAGCT 1052
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGCTCTTCCCTAATATGCTACCGTCAACTTTCCAGGACAAGATGAAAGAAGAGGAAGCT 960
Query 1053 TTGAAAAGGAAATTACTTGCAAGGATAGAATATGCTAAGTTTCTTCAGGAAACCGCCAGA 1112
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 961 TTGAAAAGGAAATTACTTGCAAGAATAGAATATGCTAAGTTTCTTCAGGAAACGGCCAAA 1020
Query 1113 GAGATGGCTAAGGAAGTTAAACATTCAAGAACTGGAGAAGTAAAGCAAACCGCTGAAGAC 1172
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 GAGATGGCTAAGGAAGTTAAACATTCAAGAACTGGAGAAGTAAAGAAAACCGCTGAAGAC 1080
Query 1173 CTGGATGAGTTTCTAGACAAGGTTCGAAGAGGTCAAATAGTCCATAATGATGAACTTTTG 1232
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1081 CTGGATGAGTTTCTAGACAAGGTTCGAAGGGGTCAAATAGTCCAAAATGACGAACTTTTG 1140
Query 1233 GGCTTTGCAAAGCTTTTCAACGATGAGCTTACTTTGGATAACATTAGCAGGCCTCGCTTG 1292
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGCTTTGCAAAGCTTTTCAATGATGAGCTTACTTTGGATAACATTAGCAGGCCTCGCTTG 1200
Query 1293 GTTAGCATGTGCAAATATATGGGTATTAGCCCATATGGAACAGATGCTTATCTGCGGTAT 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTTAGCATGTGCAAATATATGGGTATTAGCCCATATGGAACAGATGCTTATCTGCGGTAT 1260
Query 1353 ATGCTCAGAAAAAGACTGAGGAGCATTAAGGAAGATGATAAACTGATTAGAGCTGAGGGT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATGCTCAGAAAAAGACTGAGGAGCATTAAGGAAGATGATAAACTGATTAGAGCTGAGGGT 1320
Query 1413 GTGGATTCCCTTTCAGAAGCTGAGTTACGCGAAGATTGCAGGGAACGGGGAATGCTGGGA 1472
|||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1321 GTGGATTCCCTTTCAGAAGCTGAGCTACGGGAAGATTGCAGGGAACGTGGAATGCTGGGA 1380
Query 1473 CTGGTTTCAGTTGAAGAGATGAGGCAACAGCTTCGCGATTGGATGGATTTGTCACTTAAT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTGGTTTCAGTTGAAGAGATGAGGCAACAGCTTCGCGATTGGATGGATTTGTCACTTAAT 1440
Query 1533 CATTCTGTCCCCTCTTCGTTATTGATCCTCTCTAGGGCATTCACGGTTGCTGGAAGAGTT 1592
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CATTCTGTCCCCTCGTCGTTATTGATCCTCTCTAGGGCATTCACGGTTGCTGGAAGAGTT 1500
Query 1593 AAAGCAGAGGATGCTGTCCGAGCTACTCTTTCTTCTCTACCTGACGAGGTTGTGGATACT 1652
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1501 AAAGCAGAGGATGCTGTCCGAGCTACTCTTTCTTCTCTACCAGACGAGGTTGTGGATACT 1560
Query 1653 GTTGGTATTACTTCTCTGCCATCTGAAGACCCTGTTTCTGAGCGAAGACGGAAATTAGAG 1712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1561 GTTGGTATTACTTCTCTGCCATCTGAAGACCCTGTTTCTGAGCGAAGAAGGAAATTAGAG 1620
Query 1713 TACCTTGAGATGCaagaagaactgatcaaggaagaagaagagaaagaagaagaagaGCTT 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TACCTTGAGATGCAAGAAGAACTGATCAAGGAAGAAGAAGAGAAAGAAGAAGAAGAGCTT 1680
Query 1773 ACAAGGATTAAGGATGTTAAAGGTGGTGACGAGGATAAGGCACTGCAAGAGATGACCATA 1832
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 ACAAGGATTAAGGATGTTAAAGGTGGTGAAGAGGATAAGGCACTGCAAGAGATGACCATA 1740
Query 1833 CCAACAGCCAGCGAAGCACAAGAACAGGCCAGAGCTAGAGTTCTTGAACAACAAGATGAT 1892
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CCAACAGCTAGCGAAGCACAAGAACAGGCCAGAGCTAGAGTTCTTGAACAACAAGATGAT 1800
Query 1893 CTTTGCAAACTTAGCCGCGCCTTGGGCGTTTTGGCTTCCGCTTCTTCGGTGTGTAGAGAG 1952
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1801 CTTTGCAAACTTAGCCGTGCATTGGGCGTTTTGGCTTCTGCTTCTTCGGTGTGTAGAGAG 1860
Query 1953 CGCGAAGAATTCCTGAGATTGGTCAAGAAAGAGGTGGAGTTCTATAACACAATGGTCGAG 2012
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1861 CGCGAAGAATTCCTGAGATTGGTCAAGAAAGAGATGGAGTTCTATAACACAATGGTCGAG 1920
Query 2013 AGAGAAGATGTAGATGGTGAAAAAGCTGCAATGAAGGCATACAAAGCAGCTAGAGTAGAT 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1921 AGAGAAGATGTAGATGGTGAAAAAGCTGCAATGAAGGCATACAAAGCAGCTAGAGAAGAT 1980
Query 2073 ATTGACCAAGCTGATGAAGTTGCTGAAGCAGACGAGGTTTCCTCTGCACTAATGGAGAAG 2132
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1981 ATTGACCAATCTGATGAAGTTGCTGAAGCAGACGAGGTTTCCTCTGCACTAATGGAAAAG 2040
Query 2133 GTTGATGGTCTGATACAAAACCTAGAGAAGGAAATTGATGATGTGGATATCAAAATTGGC 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GTTGATGGTCTGATACAAAACCTAGAGAAGGAAATTGATGATGTGGATATCAAAATTGGC 2100
Query 2193 AAAGGCTGGCAGCTTCTTGACAGAGATCGAGATGGAAAAGTCACACCTGATGAAGTTGCG 2252
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2101 AAAGGCTGGCAGCTTCTTGACAGGGATCGAGATGGAAAGGTCACACCTGATGAAGTTGCA 2160
Query 2253 GCTGCTGCAATGTACCTGAAAGACACACTCGCTAACGACGGCCTTCAACAACTAATCAGT 2312
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2161 GCTGCTGCAATGTACCTGAAAGACACACTCGCTAAGGACGGCCTTCAACAACTAATCAGT 2220
Query 2313 AGTCTCTCCAAAGATAAAG-GG-AAGAATTATGGTGGAAGACATTGTAAGGTTGGGGAGA 2370
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGTCTCTCCAAAGATAAAGAGGGAAGAATTATGGTGGAAGACATTGTAAGGTTGGGGAGA 2280
Query 2371 TTGGGAAGCAAGCCAGAAGAAAATGCAACGGAAGAAGAATCAAGCTGAAGGAAATAATAC 2430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2281 TTGGGAAGCAAGCCAGAAGAAAATGCAACGGAAGAAGAATCAAACTGAAGGAAATAATAC 2340
Query 2431 TATGATTTTAAGACACACATAGACTTTTTAATACTAGTGAAGAGAGTTTTATTGAGAGAA 2490
|| ||||||||||||| ||||||||| | || ||||||||||||||||||||||||||
Sbjct 2341 TAAGATTTTAAGACACTTTTAGACTTTT-AGTAGTAGTGAAGAGAGTTTTATTGAGAGAA 2399
Query 2491 GCTCTACTTCATGTTTTGCTGCTTAGACATAAGCAGGCTACTTACATATACAAGCGGCTA 2550
||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2400 ACTCTATTTCAGGTTTTGCTGCTTAGACACAAGCAGTCTACTTACATATACAAGCGGCTA 2459
Query 2551 AGAATACGAGACCTTTT 2567
||| | ||||||||||
Sbjct 2460 AGAGTGTGAGACCTTTT 2476
Score = 67.6 bits (36), Expect = 5e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2602 TAACATTACGCCAAGAATGATATCTTGAGCGTTTTATTT 2640
|||||||||||||||||||||||||||||||| ||||||
Sbjct 2476 TAACATTACGCCAAGAATGATATCTTGAGCGTATTATTT 2514
> Ahg475653 jgi|Araly1|475653|fgenesh2_kg.2__783__AT1G65540.1
Length=2244
Score = 582 bits (315), Expect = 4e-165
Identities = 1217/1640 (74%), Gaps = 112/1640 (7%)
Strand=Plus/Plus
Query 696 ATAGGACCTGCTATAAAAGCTGTTGCCTCCATGAACAGGGCGGATTGGGCAAAAAAGC-T 754
||||| |||||| | | |||| |||| || |||| ||||| |||||||| || |||| |
Sbjct 514 ATAGGTCCTGCTTTGAGAGCTATTGCATCGATGAGCAGGGAAGATTGGGCTAAGAAGCTT 573
Query 755 CACTCACTGGAAACATGAGTTTGTATCAACAT-TGAAACATTATTGGCTGGGGACCAAA- 812
| |||||||||| |||| ||| ||| || | | |||| || |||||||||| ||||
Sbjct 574 C-GTCACTGGAAAGATGAATTTAAATCTAC-TCTCCAACACTACTGGCTGGGGA-CAAAG 630
Query 813 TTACTCTGGGCAGACACT-AGAATCAGT-TCAAGATTGC-TGCTCAAGTTGGCTGGTGGA 869
|| |||||||| || | || |||||| | ||| ||| || | || || ||| ||||
Sbjct 631 TTGCTCTGGGCTGA-TGTCAGGATCAGTGT-AAGGCTGCTTGTTAAACTT-GCTAATGGA 687
Query 870 AAAAGTCTCTCCAGAAGAGAAAGGCAACAGCTAACTCGAACGACAGCTGATATCTTTAGA 929
||| ||||||| || || ||| | ||||| || |||||||| || || || || ||||||
Sbjct 688 AAAGGTCTCTCTAGGAGGGAACGACAACAACTCACTCGAACAACTGCCGACATTTTTAGA 747
Query 930 TTAGTGCCATTTGCAGTGTTCATCCTTGTGCCGTTTATGGAGTTTTTGCTCCCAGT-TTT 988
||||| || ||||||| ||||| |||| || || |||||||| ||||| || || |||
Sbjct 748 TTAGTCCCGGTTGCAGTTTTCATTATTGTTCCATTCATGGAGTTCTTGCTACCGGTATTT 807
Query 989 CTTGAAGCTCTTCCCTAATATGTTACCATCAACTTTCCAGGACAAGATGAAAGAAGAGGA 1048
||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 808 CTT-AAGCTGTTCCCAAACATGTTGCCGTCAACTTTCCAGGACAAGATGAAAGAAGAGGA 866
Query 1049 AGCTTTGAAAAGGAAA-TT-ACTTGCAAGGATAGAATATGCTAAGTTTCTTCAGGAAACC 1106
||| | ||||| || || | | ||||| || || |||||||||||||| || || ||
Sbjct 867 GGCTCTAAAAAG-AAGGTTGAAT-GCAAGAATGGAGTATGCTAAGTTTCTCCAAGATACT 924
Query 1107 GCCAGAGAGATGGCTAAGGAAGTT-AAACAT-TCAAGAACTGGAGA-AGTAAAGCAA-AC 1162
| | ||| ||||| |||||||| |||| | || | | ||| || | |||| || ||
Sbjct 925 GTTAAAGAAATGGCAAAGGAAGTCCAAACCTCTC--GCAGTGGGGAGA-TAAAA-AAGAC 980
Query 1163 CGCTGAAGACCTGGATG-AGTTTCTAGA-CAAGGTTC-GAAGAGGTCAAATAGTCCAT-A 1218
|| ||||| || |||| | ||| | || |||||| | ||||||| | | || | |
Sbjct 981 TGCAGAAGATCTTGATGGA-TTTAT-GAACAAGGT-CAGAAGAGG--AGTTGGTGTTTCA 1035
Query 1219 A-TGATGAACTTTTGGGCTTTGCAAAGCTTTTCAACGATGAGCTTACTTTGGATAACATT 1277
| ||||||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1036 AATGATGAAATTTTGGGATTTGCAAAGCTCTTCAATGATGAGCTTACATTGGATAACATT 1095
Query 1278 AGCAGGCCTCGCTTGGTTAGCATGTGCAAATATATGGGTATTAGCCCATATGGAACAGAT 1337
| |||| |||| ||||| | ||||||||||| |||||||||||||||| |||||| |||
Sbjct 1096 AACAGGTCTCGATTGGTAAATATGTGCAAATACATGGGTATTAGCCCATTTGGAACTGAT 1155
Query 1338 GCTTATCTGCGGTATATGCT-CAGAAAAAGACTG-AGGAGCATTAAGGAAG-ATGATAAA 1394
|| ||| |||| |||||||| | ||||| || | ||||| ||||| ||| |||||||
Sbjct 1156 GCATATTTGCGTTATATGCTTCGGAAAA-GATTACAGGAG-ATTAAA-AAGGATGATAAG 1212
Query 1395 CTGATTAGAG-CTGAGGGTGTGGATTCCCTTTCAGAAGCTGAG-TTACGCGAAGATTGCA 1452
|||| | || |||| |||||||| || || ||||||||||| || ||| ||| |||||
Sbjct 1213 TTGATCA-AGGCTGAAGGTGTGGAGTCTCTCTCAGAAGCTGAACTT-CGCCAAGCTTGCA 1270
Query 1453 GGGA-ACGGGGAATGCTGGGACTGGTTTCAGTTGAAGAGATGAG-GCAACAGCTTCGCGA 1510
| || | | |||||||| | ||| |||||||||||| ||||| | | ||||| ||
Sbjct 1271 GAGAGA-GAGGAATGCTTCAATTGGGTTCAGTTGAAGAAATGAGAG-AGCAGCTAATTGA 1328
Query 1511 TTGGATGGATTTGTCACTTAATCATTCTGTCCCCTCTTCGTTATTGATCCTCTCTAGGGC 1570
||| ||||||| || ||||| ||||| || || || || | || || || |||||| |
Sbjct 1329 CTGGCTGGATTTATCTCTTAACCATTCGGTACCATCATCCCTCTTAATTCTTTCTAGGTC 1388
Query 1571 ATTCACGGTTGCTGG-AAGAGTTAAAGC-AGAGGATGCTGTCCGAGCTACTCTTTCTTCT 1628
||| | | ||||| || | | || || ||| || ||||| | ||||||||| || |||
Sbjct 1389 ATTTTCAATGGCTGGGAA-ACTCAA-GCCAGAAGAGGCTGTTCAAGCTACTCTCTCCTCT 1446
Query 1629 CTACCTGACGAGGTTGTGGATACTGTTGGTATTACTTCTCTGCCATCTGAAGACCCTGTT 1688
|| || || ||||||||||| |||||||| |||| |||| |||| ||||| ||||
Sbjct 1447 CTGCCAGATGAGGTTGTGGACACTGTTGGGGTTACAGCTCTTTCATCAGAAGATTCTGTA 1506
Query 1689 TCTGAGCGAA-GACGGAAATTAGAGTACCTTGAGATGCaagaagaactgatcaaggaaga 1747
|| || ||| || |||| ||||| |||||||| |||||||||||| | |||||||| ||
Sbjct 1507 TCAGAAAGAAAGA-GGAAGTTAGAATACCTTGAAATGCAAGAAGAATTAATCAAGGAGGA 1565
Query 1748 agaaga-gaaagaagaagaagaGCTTACAAGGATTAAGGA-T--G-TTAAAGGTGGTGAC 1802
|| || ||| ||||| || || | ||| ||| || || | | || ||| |
Sbjct 1566 GGAGGAAGAA-GAAGAGGAGGAAATGGCAAAGATGAAAGAGTCTGCTTCAAGCCAAAAA- 1623
Query 1803 GAGGATAAGGCACTGCAAGAGATGAC--CATACCAACAGCCAGCGAAGCACAA-GAACAG 1859
|| | || | | || | ||||||| ||| | | |||| | || || || || ||
Sbjct 1624 GATG-TA-G-CTTTGGATGAGATGATGGCAT-CTA-CAGCTAAAGATGCT-AATGAGCAA 1677
Query 1860 GCCAGAGCTAGAGTTCTTGA-ACAACAAGATG-ATCTTTGCAAACTTAGCCGCGCCTTGG 1917
|| | ||| | | |||||| | |||| || | | ||||| | || ||||| || ||||
Sbjct 1678 GCGAAAGCGAAAACTCTTGAGA-AACATGA-GCAGCTTTGTGAGCTCAGCCGTGCATTGG 1735
Query 1918 GC-GTTTTGGCTTCCGCTTCTTCGGTGT-GTA-GAGAGCGCGAAGAATTCCTGAGATTGG 1974
| |||||||||||||| ||||| || | ||| | ||||| ||||| ||||||| | | |
Sbjct 1736 -CTGTTTTGGCTTCCGCATCTTCTGT-TAGTATG-GAGCGTGAAGAGTTCCTGAAACTAG 1792
Query 1975 TCAAGAAAGAGGTGGAGTTCTATA-A-CA-CAATGGTCGAGAGAGAAGATGT-A--GATG 2028
| || |||||||| || | ||||| | || || |||| ||||| ||| || | ||||
Sbjct 1793 TTAAAAAAGAGGTAGA-T-CTATACAACAGCA-TGGT--AGAGA-AAGGTGGCACAGATG 1846
Query 2029 GTGAAAAAGCTGCAATGAAGGCATACAAAGCAGCTAGAGTAGATATTGACC-AAG--CTG 2085
||| ||| || | ||| || || ||| ||| ||| ||||| ||||| ||| ||
Sbjct 1847 ATGAGGAAGAGGCTAGGAAAGCTTATTTAGCTGCTCGAGAAGATAGTGACCGAAGTGCTC 1906
Query 2086 ATGAAGTTGCTGAA-GCAGACGAGGTTTCCTCTGCACTAATGGAGAAGGTTGATGGTC-- 2142
| ||| ||| | || || | ||| |||||||| | || | ||| || | |
Sbjct 1907 A-GAAA--GCT-ATTGCTGATAAAACTTCTTCTGCACTGTTAGATAGGGTGGA-GA-CAA 1960
Query 2143 TGATACA-AAACCTAGAGAAGGAAATTGATGATGTGGATATCAAAATTGGCAAAGGCTGG 2201
|| | || |||| | || ||||||||||||||||| |||| ||| |||||||| |||||
Sbjct 1961 TGCTCCAGAAACTT-GAAAAGGAAATTGATGATGTCGATAACAAGATTGGCAACCGCTGG 2019
Query 2202 C-AGCTTCTTGACAGAGATCGA-GATGGAAAAGTCACACCTGATGAAGTTGCGGCTGCTG 2259
| | || || ||||||||| | |||||||| || | || ||||| || || | ||||
Sbjct 2020 CGA-CTCCTGGACAGAGATT-ATGATGGAAAGGTAAGTCCAGATGAGGTAGCATCGGCTG 2077
Query 2260 CAATGTACCTGAAAGACACA 2279
| |||||| |||| || |||
Sbjct 2078 CGATGTACTTGAAGGATACA 2097
> Ahg936444 jgi|Araly1|936444|scaffold_500635.1
Length=560
Score = 220 bits (119), Expect = 3e-56
Identities = 131/137 (96%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1604 TGCTGTCCGAGCTACTCTTTCTTCTCTACCTGACGAGGTTGTGGATACTGTTGGTATTAC 1663
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 TGCTGTCCGAGCTACTCTTTCTTCTCTACCTGACGAGGTTGTTGATACTGTTGGTATTAC 404
Query 1664 TTCTCTGCCATCTGAAGACCCTGTTTCTGAGCGAAGACGGAAATTAGAGTACCTTGAGAT 1723
|||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||| ||
Sbjct 405 TTCTCTGCCAGCTGAAGACCCTGTTTCTGAGCGAACAAGGACATTAGAGTACCTTGATAT 464
Query 1724 GCaagaagaactgatca 1740
|||||||||||||||||
Sbjct 465 GCAAGAAGAACTGATCA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101700954150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5