BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59840.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486449 jgi|Araly1|486449|fgenesh2_kg.5__2441__AT3G59840.1 994 0.0
Ahg927129 jgi|Araly1|927129|scaffold_202690.1 259 2e-68
> Ahg486449 jgi|Araly1|486449|fgenesh2_kg.5__2441__AT3G59840.1
Length=669
Score = 994 bits (538), Expect = 0.0
Identities = 639/684 (93%), Gaps = 22/684 (3%)
Strand=Plus/Plus
Query 1 AAACCCTAATTCCTCAGATTACAATTTGAGAACCACCGATTCGAGAGTAGCAATGGGGAT 60
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 AAACCCTAATTCCTCAGATTACAATTTGAGAACCACCGATTC--GAGTAGCTATGGGGAT 58
Query 61 TCTATCATGGTTCACGGGAAGTCCTAAGCCATCACAGTCCGAGACGTCTAAGCCGGAGAT 120
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 59 TCTATCATGGTTCACGGGAAGTCCTAAGCCGTCACAGTCCGAGACATCTAAGCCGGAGAT 118
Query 121 GATTCAGATGCCGAAATCAGAAACTCCAGCCCCGGGGATGAATGGAGCCATAGAAGTTCC 180
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 119 GATACAGATGCCGAAATCAGAAACTCCAGCTCCGGGGATGAACGGAGCCATAGAAGTTCC 178
Query 181 TCGGCCCGATCGCGCGACGGTTTTCGAGTTCGGCTCCGTTGCTGCTACTGGAGACAGAGT 240
||||||||||||||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 179 TCGGCCCGATCGCGCGACGGTTTTCGAGTTCGGCTCCGTAGCGGCCACCGGAGACAGAGT 238
Query 241 CACTCTCGCTGGTTACTGTCCCGTTTCCGATGATCTCGAACCTTGCCGTTGGGAGATTCT 300
||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 239 CACTCTCGCGGGATACTGTCCCGTTTCCGACGATCTCGAACCTTGCCGCTGGGAGATTCT 298
Query 301 TCCCGCCGACGGCAAAGACGCTCCACAGTTTCGCGTCGTCTTCTGAGGAATCAGTCAATA 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 299 TCCCGCCGACGGCAAAGACGCTCCACAGTTTCGCGTCGTCTTCTGAAGAATCAATTAATA 358
Query 361 ATCTGTAGAAGATGTAAACTTGTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAA 420
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATCTCTAGAAGATGTAAAATTGTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAA 418
Query 421 TGTCATCTCTTTCATTTGAAATCGAACAAGTTCTCTCATCTTTAATTAGTGCAGTGATGA 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 TGTCATCTCTTTCATTTGAAATCGAACAAGTTCTC--ATCTTTAATTAGTGCAGTGATGA 476
Query 481 TTAATTTTGCTAAATTGGACTGGTTATAACAACAAAAATGTCAACGTTTGAATTAATATA 540
|||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 477 TTAATTTTGCTATATTAGACTGGTTATAACAACAAA--TGTCAACGTTTGATTTAATATA 534
Query 541 AACCAATCTCCAGGTTGTATTTTCATATTAAATTAAGCTT------A-GTTATCAATGGC 593
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 535 AACCAATCTCCAGGTTGTATTTTCATATTAAATTAAGCTTCTTTTTAAGTTATCAATGGC 594
Query 594 GTTGGTTAATTATATAAGTTCTAATTAGTTCATCTAATTATGTATGGATCCAATAAATAA 653
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 595 GTTGGTTAATTATACAAGTT-T--------CATCTAATTATGTATGGATCCAATAAATAA 645
Query 654 AGAGATTAGAAAATAGTGATTACC 677
||||||||||||||||||||||||
Sbjct 646 AGAGATTAGAAAATAGTGATTACC 669
> Ahg927129 jgi|Araly1|927129|scaffold_202690.1
Length=265
Score = 259 bits (140), Expect = 2e-68
Identities = 161/171 (94%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 263 GTTTCCGATGATCTCGAACCTTGCCGTTGGGAGATTCTTCCCGCCGACGGCAAAGACGCT 322
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 95 GTTTCCGACGATCTCGAACCTTGTCGCTGGGAGATTCTTCCCGCCGACGGCAAAGACGCT 154
Query 323 CCACAGTTTCGCGTCGTCTTCTGAGGAATCAGTCAAT-AATCTGTAGAAGATGTAAACTT 381
|||||||||||||||||||||||| |||||| | || ||||| ||||||||||||| ||
Sbjct 155 CCACAGTTTCGCGTCGTCTTCTGAAGAATCAATTGATAAATCTCTAGAAGATGTAAAATT 214
Query 382 GTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAATGTCATCTCTTT 432
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GTTCAATCTCGTCGTTGATAATTGTATTTGGTCTGGTAATGTCATCTCTTT 265
Score = 126 bits (68), Expect = 2e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 137 TCAGAAACTCCAGCCCCGGGGATGAATGGAGCCATAGAAGTTCCTCGGCCCGATCGCGCG 196
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCATAAACTCCAGCTCCGGGGATGAACGGAGCCATAGAAGTTCCTCGGCCCGATCGCGCG 60
Query 197 ACGGTTTTCGAGTTCGGCTCCGT 219
||||||||||||||| ||| |||
Sbjct 61 ACGGTTTTCGAGTTCAGCTTCGT 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5