BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59845.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324441 jgi|Araly1|324441|fgenesh1_pm.C_scaffold_5001985 667 0.0
Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605 305 4e-82
> Ahg324441 jgi|Araly1|324441|fgenesh1_pm.C_scaffold_5001985
Length=660
Score = 667 bits (361), Expect = 0.0
Identities = 588/687 (86%), Gaps = 58/687 (8%)
Strand=Plus/Plus
Query 460 TCAATGTTCCTCTCAGCTACTATACTGGAATCCTC-G---GTATGATAGGTTTAACTGCT 515
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 4 TCAATGTTCCTCTCAGCTACTATACTGGAATCCTCGGTTAGTATGATAGGTTTAACTGCT 63
Query 516 TACGCCGGGTTTTTCGAGATATGTTCACCTAAGAAAGGAGACACAGTGTTCGTGTCTGCT 575
|| |||||||||| ||||| || ||||||||| |||||||| |||||||| || |||||
Sbjct 64 TATGCCGGGTTTTACGAGACATATTCACCTAAAAAAGGAGAAACAGTGTTTGTCTCTGCG 123
Query 576 GCTTCTGGCGCGGTTGGACAGCTCGTGGGTCAGTTTGCAAAGTTGATGGGCTGCTATGTT 635
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 124 GCTTCTGGTGCGGTTGGACAGCTCGTGGGTCAGTTTGCTAAGTTGATGGGCTGCTATGTT 183
Query 636 GTTGGAAGTGCCGGAAGTAAACAAAAGGTCGATCTCCTGCTGAACAAATTCGGTTACGAT 695
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 184 GTTGGAAGTGCCGGAAGTAAACAAAAGGTTGATCTCCTGCTGAACAAATTTGGTTACGAT 243
Query 696 GATGCATTCAATTATAAGGAAGAGCCTGACCTT---GA----C----TCCGC--CTT-GA 741
|| ||||||||||| |||||||||||||||||| || | | || ||| |
Sbjct 244 GAAGCATTCAATTACAAGGAAGAGCCTGACCTTGAAGAGGTTCTTATTTGGCTTCTTATA 303
Query 742 A--GAGGTGTGTACCAAAAGGTATTGACATATACTTTGAGAACGTGGGAGGCAAAATGCT 799
| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ATTCA-GTGTTTCCCAAAAGGTATTGACATATACTTTGAGAACGTGGGAGGCAAAATGCT 362
Query 800 TGACGCGGTTCTACTTAACATGAAAACGTATGGACGAATCGCTGTATGTGGGATGATATC 859
||| |||| | | | | || | ||| || || || || | ||| ||| | || |||
Sbjct 363 TGATGCGG-T-T-C-T-AC-T--TAAC--AT-GA--AACCG-TATATATGGCA-GA-ATC 406
Query 860 TCAGTACCATCTTGAAACCAGAGACAGGT-TACAAAATCTACCTGACATCATATTCAAGA 918
| || || || | || | | | | ||||||||||||||||||||||||||
Sbjct 407 GCTGT---AT-GTGGGA--TGA-TC---TCT-C-AAATCTACCTGACATCATATTCAAGA 454
Query 919 AGATAAGGATGCAAGGGTTTGCT-TCTTATGACTT--TA-T-A--GATAGATTCCCAAAG 971
||||||||||||||||||||||| | ||||||||| || | | |||||||||||||||
Sbjct 455 AGATAAGGATGCAAGGGTTTGCTGT-TTATGACTTCATAGTCATAGATAGATTCCCAAAG 513
Query 972 TTCTTGGAGTTTGTTCTTCCCTACATAAAAGAAGAGAAATTAGCGTACGTGGAAGACATT 1031
||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 514 TTCTTGGAGTTTGTTATTCCCTACATAAAAGAAGAGAAATTAACATATGTGGAAGACATT 573
Query 1032 GTTGAAGGACTCGAGAATGGTCCTGCTGCTCTTGTAGGACTTCTTCATGGAAAAAACGTT 1091
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 574 GTTGAAGGACTCGAGAACGGTCCTGCTGCTCTTGTAGGACTTCTCCATGGACAAAACGTT 633
Query 1092 GGTAAGCAAGTTCTCAAGGTTGCTTGA 1118
|||||||||||||||||||||||||||
Sbjct 634 GGTAAGCAAGTTCTCAAGGTTGCTTGA 660
> Ahg893609 jgi|Araly1|893609|Al_scaffold_0006_1605
Length=1041
Score = 305 bits (165), Expect = 4e-82
Identities = 690/931 (74%), Gaps = 85/931 (9%)
Strand=Plus/Plus
Query 214 TGGTGAGGAATCTTTACTTGTCTTGTGACCCTTACATGGGGATTC-TCATGAGAGAACC- 271
|||||| |||||| ||||||||||| || ||||||||| ||| || | |||||| ||||
Sbjct 128 TGGTGAAGAATCTCTACTTGTCTTGCGATCCTTACATGCGGAATCGT-ATGAGAAAACCT 186
Query 272 AACTCCTTCCA-CTCTAGC-ACT-TTTGGATGCCTTCATC-CCCGGAAAGCCTATAGCTG 327
| ||||| | | || || ||| | | | |||||| | ||||| |||||||| | |
Sbjct 187 GA-TCCTTTGAGCCCT-GCTACTGCTCAG-T-CCTTCA-CTCCCGGCAAGCCTATCTCAG 241
Query 328 GAATTGGAGTGTCTCAAGTAATAGATTCTGATGATCCA-TC-TTTTACG-A-AAGGCGAT 383
| ||||||||||| |||| |||||||||| || || || ||||| | |||| ||
Sbjct 242 GGTTTGGAGTGTCTAAAGTGATAGATTCTG--GA--CACTCAGATTACGAAGAAGGTGA- 296
Query 384 ATGA-TTTGGGGAATTGT-GAACTGGG-AG-G---AGT-TTAGTACTATCAA-CCCGGCT 434
| | |||||||| || | | |||| || | ||| ||| ||| | ||| || |
Sbjct 297 CTTACTTTGGGGAGCAGTAGGA-TGGGAAGAGTACAGTGTTATTAC-ACCAATTCCTAAT 354
Query 435 GCTAT-A-TTCAAAATCGACGTCAATATCAATGTTCCTCTCAGC-TACTATACTGGAATC 491
|| | | ||||||||| | || ||| | || |||| || | | ||||| |||||| |
Sbjct 355 -CT-TCACTTCAAAATC--CATC-ATACCGATTTTCC-CTTATCTTACTACACTGGACTT 408
Query 492 CTCGGTATG-ATAGGTTTAACTGCTTACGCCGGGTTTTTCGAGATATGTTCACCTAAGAA 550
|| |||||| | ||| | || || || | ||||||| |||||| ||||| || |||||
Sbjct 409 CTTGGTATGCCT-GGTATGACCGCATATGTTGGGTTTTACGAGATCTGTTCTCCAAAGAA 467
Query 551 AGGAGACACAGTGTTCGTGTCTGCTGCTTCTGGCGCGGTTGGACAGCTCGTGGGTCAGTT 610
|||||| || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||
Sbjct 468 AGGAGATACCGTGTTTGTGTCAGCTGCCTCTGGCGCGGTTGGTCAGCTTGTAGGACAATT 527
Query 611 TGCAAAGTTGATGGGCTGCTATGTTGTTGGAAGTGCCGGAAGTAAACAAAAGGTCGATCT 670
||| ||| ||||||| || ||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 528 TGCTAAGATGATGGGTTGTTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATCT 587
Query 671 CCTGC-TGAACAAATTCGG-TTACGATGATGCATTCAATTATAAGGAAGAGC-CTGACCT 727
||| | |||||| || || || ||||||||||||||| || || ||||| | | | ||
Sbjct 588 CCT-CAAGAACAAGTTTGGATT-CGATGATGCATTCAACTACAAAGAAGAACAC-AATCT 644
Query 728 TGACT-CCGCCTTGAAGAGGTGTGTACCAAAAGGTATTGACATATACTTTGAGAACGTGG 786
| | | | ||| | || |||||| | || |||| |||||||||||||||||||||||||
Sbjct 645 T-ATTGCTGCCCTAAAAAGGTGTTTCCCTGAAGGCATTGACATATACTTTGAGAACGTGG 703
Query 787 GAGGCAAAATGCTTGACGCGGTTCTACTTAA-CATGAAAACGTATGGACGAATCGCTGTA 845
||||||| ||||| || || || | ||||| ||||| | | | || || ||||| | |
Sbjct 704 GAGGCAAGATGCTGGATGCAGTGAT-CTTAAACATGAGACCACACGGCCGTATCGCGGCA 762
Query 846 TGTGGGATGATATCTCAGTACCATCTTGAA-A--CCAGA-GACAGGTTACAAAATCTAC- 900
||||||||||| || |||||| |||| ||| | || || | || | || ||| |
Sbjct 763 TGTGGGATGATCTCACAGTACAATCT-GAAGAATCCGGAAGGCATAT-ACGGGCTCT-CG 819
Query 901 CTGACATCATATTCAAGAAGA-TAAGGAT-GCAAGGGTTTG-CT-TCTT--ATGACTTTA 954
|| ||| | | ||| | || | | || | |||||||| || | || || ||||
Sbjct 820 CT--CATTACCTACAA-ACGAATCCGTATCG-AAGGGTTTAACTGT-TTCGATTACTTCG 874
Query 955 TAGATAGATTCCCA-AAGTTCTTGGAGTTTGTTCTTCCCTACATAAAAGAAGAG-AA-AT 1011
| | | || | || || |||||||||||||| |||| || |||| ||||| | || ||
Sbjct 875 -ACA-A-ATACTCAGAA-TTCTTGGAGTTTGTGGTTCCGTATATAAGAGAAG-GTAAGAT 929
Query 1012 TAGCGTACGTGGAAGACATTGTTGAAGG-ACTCGAGAATGGTCCTGCTGCTCTTGTAGGA 1070
| |||| |||||||| ||| ||| || | |||||| || |||||||||||| || |||
Sbjct 930 AA-CGTATGTGGAAGATGTTGCTGATGGGA-TCGAGAGTGCTCCTGCTGCTCTCGTTGGA 987
Query 1071 CTTCTT-CATGGAAAAAACGTTGGTAAGCAA 1100
|| ||| || || |||||||| || || |||
Sbjct 988 CT-CTTTCACGGTAAAAACGTCGGGAAACAA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5