BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59850.1 Length=1389 Score E Sequences producing significant alignments: (Bits) Value Ahg486450 jgi|Araly1|486450|fgenesh2_kg.5__2442__AT3G59850.1 2156 0.0 > Ahg486450 jgi|Araly1|486450|fgenesh2_kg.5__2442__AT3G59850.1 Length=1389 Score = 2156 bits (1167), Expect = 0.0 Identities = 1319/1393 (95%), Gaps = 8/1393 (1%) Strand=Plus/Plus Query 1 CACCACTTTTCAACTTCTCCCTCTATCTCTCACTTTCAAAGCAATGCATTCTTCACTTCT 60 ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||| Sbjct 1 CACCACTTTCCAACTTCTCCCTCTATCTCTCACTCTCAAAACAATGCCTTCTTCACTTCT 60 Query 61 CATAGTTCTCCTCTTTCTCCTCTCGGTCTCATCTTCCTCAGCTCAAACCTACAATATCCT 120 || |||||| ||||||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 61 CACAGTTCTTCTCTTTCTCCTCTCGATCCCATCGTCCTCAGCTCAAACCTACAATATCCT 120 Query 121 CTCTTACGGAGCCAAACCCGACGGCAAAACCGACTCGACCAAGGCCTTTACCGTCC-TGT 179 |||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || ||| Sbjct 121 CTCTTACGGAGCCAAACCCGACGGTAAAACCGACTCCACCAAGGCCTTAACCG-CCGTGT 179 Query 180 GGGCCAAAGCATGTGCATCGGTCAAACCGGTCACCATTTTGGTACCTAAGGGACGGTTTT 239 |||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 180 GGGCCAAAGCCTGCGCCTCGGTCAAACCGGTAACCATTTTGGTACCTAAGGGACGATTTT 239 Query 240 TGTTAAGAAGCATTATTTTTGACGGTTCCAAGTGTAAACGCAAGTCCGTCACGTTCCGTA 299 | |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 240 TCTTAAGAAGCATTATTTTTGACGGTGCCAAATGTAAACGCAAGTCCGTCACGTTCCGTA 299 Query 300 TCCAAGGTACACTTGTGGCTCCATCGGATTATCGAGTCATCGGTAAAGAAAACTATTGGA 359 ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct 300 TCCAAGGTACACTTGTGGCTCCATCGGATTATCGAATCATCGGTAAGGAAAATTATTGGA 359 Query 360 TTTTGTTCCAGCATCTCGACGGCATCTCTGTCTACGGCGGAGTTCTTGACGCCCAGGGAG 419 |||| |||||||||||||||||| ||||||| ||||| |||||||||||||| |||||| Sbjct 360 TTTTATTCCAGCATCTCGACGGCCTCTCTGTGTACGGTGGAGTTCTTGACGCTCAGGGAA 419 Query 420 CTTCTCTATGGTCTTGCAAAAAGTCCGGCAAGAATTGCCCGAGTGGCGCCACGAGCATAG 479 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTTCTCTTTGGTCTTGCAAAAAGTCCGGCAAGAATTGCCCGAGTGGCGCCACGAGCATAG 479 Query 480 GGTTTCAGAGCTCACGCAACGTGGTGATCTCCGGGCTGACGTCACTT-AACAGTCAGATG 538 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 480 GGTTTCAGAGCTCAAGCAACGTGGTGATCTCCGGGCTGACGTCA-TTAAACAGTCAGATG 538 Query 539 TTTCACGTCGCGATTAACGGCTGCAGTAACGTAAAGCTCGACGGAGTCAAAGTTTCTGCA 598 |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| || Sbjct 539 TTTCACGTCGCGATTAACGGCTGCCGTAACGTGAAGCTCGAAGGAGTCAAAGTTTCGGCT 598 Query 599 GACGGAAACAGTCCAAACACTGATGGGATCCACGTGCAGTCATCATCTACCGTCTCCATC 658 ||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct 599 GACGGAAACAGTCCAAACACTGACGGAATCCACGTGCAGTCATCATCCACCGTGTCCATC 658 Query 659 CTCAACTCCAAAATCTCCACCGGCGATGATTGTGTCTCCATCGGTCCCGGCACTAACGGC 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CTCAACTCCAAAATCTCCACCGGCGATGATTGTGTCTCCATCGGTCCCGGCACTAACGGC 718 Query 719 CTCTGGATCGAGAATGTCGCTTGTGGCCCTGGCCATGGGATCAGCATTGGAAGCTTGGGA 778 |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 719 CTCTGGATCGAGAACGTCGCTTGTGGTCCTGGCCATGGTATCAGCATTGGGAGCTTGGGA 778 Query 779 AAAGAAAGTGTGGAGGTAGGTGTACAAAACATAACAGTGAAAACGGCGACGTTTACAGGA 838 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AAAGAAAGTGTGGAGGCAGGTGTACAAAACATAACAGTGAAAACGGCGACGTTTACAGGA 838 Query 839 ACAGAGAATGGGGTGAGAATAAAGTCATGGGCCAGGCCCAGTAATGGATTTGCTAAGAAT 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACAGAGAATGGGGTGAGAATAAAGTCATGGGCCAGGCCCAGTAATGGATTTGCTAAGAAT 898 Query 899 ATCCGTTTCCAGCATTGTGTTATGAACAACGTACAAAACCCAATCGTCATTGACCAAAAC 958 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 899 ATCCGTTTCCAACATTGTGTTATGAACAACGTACAAAACCCAATCGTTATTGACCAAAAC 958 Query 959 TACTGCCCTGGCAACGAAAATTGCCCTAATCAGGTTTCTGGGATAAAAATCAGCGATGTA 1018 || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 959 TATTGTCCTGGCAACGAAAATTGCCCTAATCAGGTTTCTGGGATAAAAATTAGCGATGTA 1018 Query 1019 ATGTTCTTCGATATACACGGGACATCGGCGACGGAAGTTGGAGTGAAATTAGACTGTAGC 1078 |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct 1019 ATGTTCTTCGATATACACGGAACATCGGCGACAGAAGTCGGAGTGAAATTAGACTGTAGC 1078 Query 1079 TCTAAGAAGCCGTGCACGGGAATTCGAATTCAAGATGTGAAGTTGACGTACCGGAATAAA 1138 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TCTAAGAAGCCGTGCACCGGAATTCGAATTCAAGATGTGAAGTTGACGTACCGGAATAAA 1138 Query 1139 CCAGCAACAACAGATTGTAGTCACGCTGGAGGTAGTGAGGCAGGATTTCAACGGCCCAAC 1198 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1139 CCAGCAACAACAGATTGTAGTCATGCCGGAGGAAGTGAGGCAGGATTTCAACGGCCCAAC 1198 Query 1199 AGTTGTCTATGACCAGAAAAGA-AAAATATTTGTCTTCTTTTTGTTAGTAGTGTAATTGT 1257 ||||||||||||||| || || ||||||||||||||| ||| |||||| ||| |||||| Sbjct 1199 AGTTGTCTATGACCA-AAT-GACAAAATATTTGTCTTCATTTCGTTAGTTGTGAAATTGT 1256 Query 1258 AAGTAACGTCGTATTTTC-ATATATATTACGGCTTTATTCCTGGAGGGTTGGAATACGTG 1316 |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 1257 AAGTAACGTCGTATTTTCCATATGTATTACGGCTTTATTCCTGGAGGGTTGGGATACGTG 1316 Query 1317 AAATTATGGTCTAGTATTTTCGCAAAATCAATTTCTAATGATGCTATTTGTTATGCATTA 1376 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1317 AAATTATGGTCTAGTATTTTCACAAAATCAATTTCTGATGATGCTATTTGTTATGCATTA 1376 Query 1377 GTCAATGCGGACT 1389 ||||||||||||| Sbjct 1377 GTCAATGCGGACT 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51917003935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5