BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59870.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939018 jgi|Araly1|939018|scaffold_503209.1 1384 0.0
Ahg483511 jgi|Araly1|483511|fgenesh2_kg.4__2571__AT2G43945.1 638 0.0
> Ahg939018 jgi|Araly1|939018|scaffold_503209.1
Length=911
Score = 1384 bits (749), Expect = 0.0
Identities = 860/913 (94%), Gaps = 9/913 (1%)
Strand=Plus/Plus
Query 169 TCGTACGTGGTCGTAGTGGAGATGAGTTCGGCTCTACCTTTGAAGCTTTTGTTGCCTCTT 228
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 TCGTACGTGGTCGTTGTGGAGATGAGTTCGGCTCTACCTTTGAAGCTCTTGTTGCCTCTT 63
Query 229 ACAACAACTTCATTGCTACCTTCTCCTTTCCGATCGGATAACCCTAACTTCTATCGCCGT 288
|||||||| ||| | ||||||||||| |||||||| ||||||||||| ||| ||||||||
Sbjct 64 ACAACAACATCACTACTACCTTCTCCGTTCCGATCAGATAACCCTAATTTCCATCGCCGT 123
Query 289 CGTTCCTCTTCCTCTACTTCGTGTTCTTCTCAATCCCA--ATCGTT-TCAGCTTTTCTCT 345
|||||||||||||||||||||| |||||| ||||| || || || || ||||||||||
Sbjct 124 CGTTCCTCTTCCTCTACTTCGTCTTCTTCCCAATCTCATTCTCCTTCTCTGCTTTTCTCT 183
Query 346 GTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGTGCTTTCCTGAACAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGTGCTTTCCTGAACAA 243
Query 406 ACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGG 465
||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 244 ACGGGAGATCGAGAAGACGTGGATAGTTGGATGAACAAAGAGGACAATGTGACTTGTAGG 303
Query 466 TTTGACTCAGATGAAGACACCACCACCACCGGACTCCGGATTCCAACACAAGCTCAAGCT 525
||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 304 TTTGAATCAGATGAAG--A-CACCACCACCGGACTCCGGATTCCAACACAAGCTCAGGCT 360
Query 526 ATCGTTGAAGGACCTGGTTCACTTGCTGTGTCGGAGCTACAACGAGTCCCTGATGTAGAT 585
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 361 ATCGTTGAAGGACCTGGTTCAGTTGCTGTGTCGGAGCTACAGCCAGTCCCTGATGTAGAT 420
Query 586 TATATACAAGAACTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGA 645
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATATACAAGAGCTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGA 480
Query 646 ACTAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCTATGCTATGGTT 705
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 ACAAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCTATGCCATGGTT 540
Query 706 ATAACTAAAAACCATATCTACACATCAGGTGCAGCTGGAACCAATGCAGCTGTTATAAGA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAACTAAAAACCATATCTACACATCAGGTGCAGCTGGAACCAATGCAGCTGTTATAAGA 600
Query 766 GGTGCACTTAGAGCAGAGAGACCAGAGCTTCTTACAGTTATCTTACCTCAAAGTTTGAAA 825
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTGCACTTAGAGCAGAAAGACCGGAGCTTCTTACAGTTATCTTACCTCAAAGTTTGAAA 660
Query 826 AAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAGTACAAAACGTGATAGAAAAGCCT 885
|| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 661 AAACAACCTCCTGAGAGCCAGGAACTATTGTCAAAAGTACAAAATGTGATAGAAAAGCCT 720
Query 886 CACAACGACCATTTACCGTTATTAGAAGCCAGCAGGCTATGTAACATGGATATCATATCA 945
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 721 CACAACGACCATTTACCATTATTAGAAGCCAGCAGGCTTTGTAACATGGACATCATATCA 780
Query 946 CAAGTGCAACAAATCATTTGCTTTGCGTTTCATGATAGTAAGCTTCTCATGGAGACATGT 1005
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CAAGTGCAACAAATAATCTGCTTTGCGTTTCATGACAGTAAGCTTCTCATGGAGACATGT 840
Query 1006 CAAGAAGCTAGAAATCTCCGGAAGATTGTTACCCTCTTCTACCTGGATTGAGTGATT-CA 1064
|||||||| | ||||||||||||||||||||| ||||||||||| |||||| ||||| ||
Sbjct 841 CAAGAAGCCAAAAATCTCCGGAAGATTGTTACTCTCTTCTACCTCGATTGATTGATTTCA 900
Query 1065 GTGTTTCCCACTT 1077
|| || |||||||
Sbjct 901 GT-TT-CCCACTT 911
> Ahg483511 jgi|Araly1|483511|fgenesh2_kg.4__2571__AT2G43945.1
Length=1217
Score = 638 bits (345), Expect = 0.0
Identities = 491/562 (87%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 499 CTCCGGATTCCAACACAAGCTCAAGCTATCGTTGAAGGACCTGGTTCACTTGCTGTGTCG 558
||| ||||||| || || || || ||||||||||||||| |||||||| |||| |||||
Sbjct 500 CTCAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCA 559
Query 559 GAGCTACAA-CGAGTCC-CTGATGTAGATTATATACAAGAACTGTTGGCTATACAGCAAC 616
|||||| || || | || ||||||||||||| |||||||| || || || ||||| ||||
Sbjct 560 GAGCTAAAACCG-G-CCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAAC 617
Query 617 AAGGACCAAGAACAATTGGCTTCTTTGGAACTAGAAATATGGGTTTCATGCATCAAGAGC 676
|||| || ||| |||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 618 AAGGGCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAAC 677
Query 677 TCATTCAGATTCTTAGCTATGCTATGGTTATAACTAAAAACCATATCTACACATCAGGTG 736
| ||| |||| |||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 678 TGATTGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTG 737
Query 737 CAGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTT-AGAGCAGAGAGACCAGAGCTT 795
|| ||||||| ||||| || || || ||||||||| || ||||||||||||||||||||
Sbjct 738 CATCTGGAACTAATGCGGCAGTCATCAGAGGTGCA-TTGAGAGCAGAGAGACCAGAGCTG 796
Query 796 CTTACAGTTATCTTACCTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTAC-T 854
|||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| | |
Sbjct 797 CTTACAGTAATATTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACT-CTT 855
Query 855 GTCAAAAGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGC 914
||| ||||||||||||||| |||||||||| ||||| |||||||| || |||||||||||
Sbjct 856 GTCTAAAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGC 915
Query 915 CAGCAGGCTATGTAACATGGATATCATATCACAAGTGCAACAAATCATTTGCTTTGCGTT 974
||||||||| ||||| ||||| |||||||||||||| |||||| | || ||||| |||||
Sbjct 916 CAGCAGGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTT 975
Query 975 TCATGATAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAGAAATCTCCGGAAGATTGT 1034
|||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 976 TCATGACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGT 1035
Query 1035 TACCCTCTTCTACCTGGATTGA 1056
|| ||||||||||| ||||||
Sbjct 1036 CACTCTCTTCTACCTCGATTGA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5