BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G59880.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324444 jgi|Araly1|324444|fgenesh1_pm.C_scaffold_5001988           512    1e-144


> Ahg324444 jgi|Araly1|324444|fgenesh1_pm.C_scaffold_5001988
Length=468

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 327/352 (93%), Gaps = 0/352 (0%)
 Strand=Plus/Plus

Query  119  ATGGCGTTTAAGGCTATGAGGAAAAACAGGACCCGAAAGCGTTACGAGTGTCTCTCTTCC  178
            ||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||
Sbjct  1    ATGGCGTTTAAGGCTATGAGGAAAAACCGGACCCGTCGGCGTTATGAGTGTCTCTCTTCC  60

Query  179  TCCGCCGGCACGACTAAAGACTCCTACGACGATTCCGACTTCTTCCCCTTCGCCGCTAAA  238
            |||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||
Sbjct  61   TCCGCCGGCACGACTAAAGATTCCAACGACGACTACGACTTCTTCCCCTTCGCCGCTAAA  120

Query  239  TCCGATCACTCCGTTGTATCTCGACCTTCGTCGTCTTTTGATCATATAGAGATGAATAAC  298
             ||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  121  CCCGAAAACTCCGTTGTATCTCGACCCTCATCGTCTTTTGATCATATAGAGATGAATAAC  180

Query  299  GTTGATGTTCAACAACGTCACCACCGTGGATGGTCAGTGGGAGATTTCTCATCCATGTCT  358
            |||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct  181  GTTGGTGTTCAACAACGTCACCGCCGTGGATGGTCGGTTGGAGATTTCTCATCCATGTCT  240

Query  359  TGTCGGGAAGGAAAAAGATCTGGTGTCGACGGCGGAGATATCGGTTTTTCTCCGTCGCGG  418
            ||||| ||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||
Sbjct  241  TGTCGTGAAGGAAGAAGATCTGGTGCCGACGGCGGAGAAACCGGTTTTTCTCCGTCCCGG  300

Query  419  CGAGGACAACTTGTGAGGAATAGAAGCCATAGATTGTTCTCTTGTGTCTCAG  470
            |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGAGGACAGCTTGTGAGGAATAGAAGCCATAGATTGTTCTCTTGTGTCTCAG  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5