BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59890.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1 1892 0.0
Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1 1029 0.0
> Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1
Length=1398
Score = 1892 bits (1024), Expect = 0.0
Identities = 1247/1352 (92%), Gaps = 26/1352 (2%)
Strand=Plus/Plus
Query 1 ACCAGAAGCTTTGGATCTGACGTAAAGG-GAAAATGTCTAAAACCCTACCGTTCGCCGGT 59
|||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1 ACCAGAAGCTTTGGATCTAACGTAAAGGTG-AAATGTCTAAAACCCTAGCGTTCGCCGGT 59
Query 60 TCGAATTTTTCAGACAAGGTTTGAACATAAA-TTCTAATTTCGTTGC-TCGACAGCAATC 117
||||||||| |||||||||||||||| |||| | | || ||||| | || ||||||| |
Sbjct 60 TCGAATTTTCCAGACAAGGTTTGAACTTAAACTCCGAA-CTCGTT-CTTCTACAGCAAAC 117
Query 118 TCGGACCAAGTGGAAACCGAAAATGGCGGCGAATGGGCTAATGGCGGCATCTAGTGTGTT 177
||||||||| |||||| | |||||||||||||||||||||||| ||||||| | ||||||
Sbjct 118 TCGGACCAATTGGAAAACAAAAATGGCGGCGAATGGGCTAATGACGGCATCCAATGTGTT 177
Query 178 TCTCCACCGTCCTGTACATCCCCATTTCTCGTTCT-CTTCTAGAACGAATCAAATGGTTC 236
||| |||||||||| | ||| | |||||||||| | ||||||||||||||||||||| ||
Sbjct 178 TCTTCACCGTCCTGAAAATCTCAATTTCTCGTT-TACTTCTAGAACGAATCAAATGGCTC 236
Query 237 CACTCGGCTTCAAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACGCTGTTTTCCGGTGG 296
|||||||| |||||||||||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct 237 CACTCGGCGTCAAAGGCCGTGTTGGTTTCATGGGCAATGTGAAACTCTGTTCGACGGTGG 296
Query 297 TATTGTCAATGGGAAAGTCGGAGACTTTCGAGGAAGCTGGAAATTCCGTTGCGCCTGGTA 356
| |||||||||| ||||||||||||||| |||||||| || || ||||| ||||||||||
Sbjct 297 TTTTGTCAATGGCAAAGTCGGAGACTTTAGAGGAAGCCGGCAAGTCCGTAGCGCCTGGTA 356
Query 357 ACGGCATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAG 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 ACGGCATATCGATCATGGTGAATGGATGCAGTGGCAAAATGGGGAAAGCTGTCATCAAAG 416
Query 417 CGGCAGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTG 476
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 CGGCAGATTCTGCTGGAGTTAATATTGTTCCTACATCATTTGGATCTGTTGAAGAGGCTG 476
Query 477 GCCAGACTGTTGAGGTCTGTGGAAAGGAGATTCTTGTGCATGGTCCTACTGAAAGAGAAA 536
|||| | ||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 477 GCCAAAGAGTTGAGGTCTGTGGAAAGGAGATTCTTGTTCATGGTCCTACCGAGAGAGAAA 536
Query 537 AGGTGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTC 596
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGTTCTATCTTCGGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTC 596
Query 597 CCTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGG 656
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 597 CCTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCCTTTGTCATGG 656
Query 657 GAACAACTGGAGGAGACAGGACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATG 716
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 657 GAACAACTGGAGGAGACAGGACAAGGTTGTATAAAACTGTAGAGGAATCAAAGATTTATG 716
Query 717 CTGTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCA 776
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 CTGTGATCTCCCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCCATGGAGATCA 776
Query 777 TGTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATC 836
Query 837 AAGCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAAT 896
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 837 AAGCTAGCAAATTGGATGCATCTGGAACTGCAAAAGCTGTAATTTCTTGCTTTCAGAAAT 896
Query 897 TAGGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG 956
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGGGGGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG 956
Query 957 AGGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGA 1016
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGGTGGTGGGTGTTCCGGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGA 1016
Query 1017 CATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATAT 1076
Query 1077 ATGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCTAAAGCAG 1136
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1077 ATGCTGAGGGTACTGTTGATGCAGTGCTTTTCCTTGCCAAAAAGATCCGGTCTAAAGCAG 1136
Query 1137 AGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGAACAAACC 1196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGAAGCGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGAACAAACC 1196
Query 1197 CCA-A-GCTG-C-AGT-GGCTAGTAAAGAAGAGTATATGAAACTCTATATaaaaaaaTGT 1251
| | | | | | | || ||| | |||| | | |||| |||||||||||| |||
Sbjct 1197 TGAGACGATTTCCAATTGGA-AGTTTC-A-GAGTGT-T-AAACACTATATAAAAAA-TGT 1250
Query 1252 CATGCCAAGTTAAATGTGctttgg-ttcttcatttctttgtagggttttgtctttttatg 1310
||||||||||| |||| || || ||||||||||||||||| ||||| ||||||| |||
Sbjct 1251 G-TGCCAAGTTAA-TGTG-TTGGGGTTCTTCATTTCTTTGTAAGGTTTCGTCTTTT-ATG 1306
Query 1311 gcttctctgtttctcttttcGGATTTGCAAAA 1342
|||||||||||||||||| || || ||||||
Sbjct 1307 GCTTCTCTGTTTCTCTTTCCGAAT--GCAAAA 1336
> Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1
Length=1367
Score = 1029 bits (557), Expect = 0.0
Identities = 823/951 (87%), Gaps = 19/951 (2%)
Strand=Plus/Plus
Query 248 AAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACGCT-GTTTTCCGGTGGTATTGTCAAT 306
|||||||||||||||||||| |||| || || ||| | || |||||||| | || |||||
Sbjct 205 AAAGGCCGTGTTAGTTTCATGGGCATTGGGACACG-TCGTCTTCCGGTGATTTTATCAAT 263
Query 307 G---G-GAAAGTCGGAG-ACTTTCGAGGAAGCTG-GAAATTCCGTTGCGCCTGGTAACGG 360
| | | | | ||||| | | ||||| |||| |||| || ||| |||||| || ||
Sbjct 264 GACAGCG-ACGGCGGAGTCCGGT-GAGGAGGCTGTGAAA-TCTGTTTTGCCTGGAAATGG 320
Query 361 CATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAGCGGC 420
|||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 321 CATATCCATCATGGTGAATGGATGTAGTGGCAAAATGGGGAAAGCTGTAATCAAAGCAGC 380
Query 421 AGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTGGCCA 480
||| ||||| ||||| ||||||||||| | ||||||||| |||| || |||| ||| ||
Sbjct 381 AGACTCTGCAGGAGTAAATATTGTTCCCATATCATTTGGATCTGCTGGTGAGGATGGTCA 440
Query 481 GACTGTTGAGGTCTGTGGAAAGGAGATT-CTTGTGCATGGTCCTACTGAAAGAGAAAAGG 539
|| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 441 GAGAGTTGAGGTCTGTGGAAAGGAGATTAC-TGTGCACGGTCCTACTGAAAGAGAAAAGG 499
Query 540 TGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTCCCT 599
| || ||||| |||||||||||| | || || |||||||||||||||||||||||||| |
Sbjct 500 TTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAATTGTTGTGGACTACACAATTCCTT 559
Query 600 CTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGGGAA 659
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||
Sbjct 560 CTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGTAGGTGTTCCTTTCGTCATGGGAA 619
Query 660 CAACTGGAGGAGACAGG-ACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATGCT 718
||||||| ||||| ||| |||| ||||||| ||||||| |||||| ||||||||||||||
Sbjct 620 CAACTGGTGGAGATAGGAACAA-ATTGTATGAAACTGTTGAGGAAGCAAAGATTTATGCT 678
Query 719 GTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCATG 778
|||||||| ||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 679 GTGATTTCCCCACAGATGGGTAAACAGGTTGTAGCATTTCTTGCGGCCATGGAGATCATG 738
Query 779 TCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATCAA 838
||||||||||||| || || ||| |||||||||| || || ||||||||||||||||||
Sbjct 739 GCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCATTGGATGTGATGGAGTCTCATCAA 798
Query 839 GCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAATTA 898
|||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||
Sbjct 799 GCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGTTATTTCTTGCTTCCAGGAATTG 858
Query 899 GGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG-A 957
|| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| | || |
Sbjct 859 GGTGTGTCTTACGACATGGATCAGATACAATTGATTCGGGATCCAAAACAGCA-AGTGGA 917
Query 958 GGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGAC 1017
| ||||||||||||| || |||||| |||| || ||||||||||||||||||||||||||
Sbjct 918 GATGGTGGGTGTTCCCGAAGAGCATATCTCTGGCCATGCTTTCCATCTTTATCACTTGAC 977
Query 1018 ATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATATA 1077
|||||| ||| ||||||| ||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 978 ATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCATAATGTCTGCGGCAGATCAATATA 1037
Query 1078 TGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCT-AAAGCAG 1136
|| ||||||||||||||||| ||||| ||||| ||||||||||| || | | |||||||
Sbjct 1038 CGCCGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAAAAAGATTCGAT-TGAAAGCAG 1096
Query 1137 AGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTT 1187
| || | ||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1097 ATCAGCGAATCTACAACATGATCGATGTTTTGAGAGAGGGAAACATGCGTT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5