BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59890.1 Length=1444 Score E Sequences producing significant alignments: (Bits) Value Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1 1892 0.0 Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1 1029 0.0 > Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1 Length=1398 Score = 1892 bits (1024), Expect = 0.0 Identities = 1247/1352 (92%), Gaps = 26/1352 (2%) Strand=Plus/Plus Query 1 ACCAGAAGCTTTGGATCTGACGTAAAGG-GAAAATGTCTAAAACCCTACCGTTCGCCGGT 59 |||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||| Sbjct 1 ACCAGAAGCTTTGGATCTAACGTAAAGGTG-AAATGTCTAAAACCCTAGCGTTCGCCGGT 59 Query 60 TCGAATTTTTCAGACAAGGTTTGAACATAAA-TTCTAATTTCGTTGC-TCGACAGCAATC 117 ||||||||| |||||||||||||||| |||| | | || ||||| | || ||||||| | Sbjct 60 TCGAATTTTCCAGACAAGGTTTGAACTTAAACTCCGAA-CTCGTT-CTTCTACAGCAAAC 117 Query 118 TCGGACCAAGTGGAAACCGAAAATGGCGGCGAATGGGCTAATGGCGGCATCTAGTGTGTT 177 ||||||||| |||||| | |||||||||||||||||||||||| ||||||| | |||||| Sbjct 118 TCGGACCAATTGGAAAACAAAAATGGCGGCGAATGGGCTAATGACGGCATCCAATGTGTT 177 Query 178 TCTCCACCGTCCTGTACATCCCCATTTCTCGTTCT-CTTCTAGAACGAATCAAATGGTTC 236 ||| |||||||||| | ||| | |||||||||| | ||||||||||||||||||||| || Sbjct 178 TCTTCACCGTCCTGAAAATCTCAATTTCTCGTT-TACTTCTAGAACGAATCAAATGGCTC 236 Query 237 CACTCGGCTTCAAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACGCTGTTTTCCGGTGG 296 |||||||| |||||||||||||| ||||||| ||||||||||||| ||||| |||||| Sbjct 237 CACTCGGCGTCAAAGGCCGTGTTGGTTTCATGGGCAATGTGAAACTCTGTTCGACGGTGG 296 Query 297 TATTGTCAATGGGAAAGTCGGAGACTTTCGAGGAAGCTGGAAATTCCGTTGCGCCTGGTA 356 | |||||||||| ||||||||||||||| |||||||| || || ||||| |||||||||| Sbjct 297 TTTTGTCAATGGCAAAGTCGGAGACTTTAGAGGAAGCCGGCAAGTCCGTAGCGCCTGGTA 356 Query 357 ACGGCATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAG 416 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 ACGGCATATCGATCATGGTGAATGGATGCAGTGGCAAAATGGGGAAAGCTGTCATCAAAG 416 Query 417 CGGCAGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTG 476 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 417 CGGCAGATTCTGCTGGAGTTAATATTGTTCCTACATCATTTGGATCTGTTGAAGAGGCTG 476 Query 477 GCCAGACTGTTGAGGTCTGTGGAAAGGAGATTCTTGTGCATGGTCCTACTGAAAGAGAAA 536 |||| | ||||||||||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 477 GCCAAAGAGTTGAGGTCTGTGGAAAGGAGATTCTTGTTCATGGTCCTACCGAGAGAGAAA 536 Query 537 AGGTGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTC 596 |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGGTTCTATCTTCGGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTC 596 Query 597 CCTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGG 656 ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 597 CCTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCCTTTGTCATGG 656 Query 657 GAACAACTGGAGGAGACAGGACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATG 716 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 657 GAACAACTGGAGGAGACAGGACAAGGTTGTATAAAACTGTAGAGGAATCAAAGATTTATG 716 Query 717 CTGTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCA 776 ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 717 CTGTGATCTCCCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCCATGGAGATCA 776 Query 777 TGTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATC 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TGTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATC 836 Query 837 AAGCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAAT 896 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 837 AAGCTAGCAAATTGGATGCATCTGGAACTGCAAAAGCTGTAATTTCTTGCTTTCAGAAAT 896 Query 897 TAGGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG 956 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 TGGGGGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG 956 Query 957 AGGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGA 1016 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 AGGTGGTGGGTGTTCCGGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGA 1016 Query 1017 CATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATAT 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATAT 1076 Query 1077 ATGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCTAAAGCAG 1136 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1077 ATGCTGAGGGTACTGTTGATGCAGTGCTTTTCCTTGCCAAAAAGATCCGGTCTAAAGCAG 1136 Query 1137 AGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGAACAAACC 1196 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 AGAAGCGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGAACAAACC 1196 Query 1197 CCA-A-GCTG-C-AGT-GGCTAGTAAAGAAGAGTATATGAAACTCTATATaaaaaaaTGT 1251 | | | | | | | || ||| | |||| | | |||| |||||||||||| ||| Sbjct 1197 TGAGACGATTTCCAATTGGA-AGTTTC-A-GAGTGT-T-AAACACTATATAAAAAA-TGT 1250 Query 1252 CATGCCAAGTTAAATGTGctttgg-ttcttcatttctttgtagggttttgtctttttatg 1310 ||||||||||| |||| || || ||||||||||||||||| ||||| ||||||| ||| Sbjct 1251 G-TGCCAAGTTAA-TGTG-TTGGGGTTCTTCATTTCTTTGTAAGGTTTCGTCTTTT-ATG 1306 Query 1311 gcttctctgtttctcttttcGGATTTGCAAAA 1342 |||||||||||||||||| || || |||||| Sbjct 1307 GCTTCTCTGTTTCTCTTTCCGAAT--GCAAAA 1336 > Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1 Length=1367 Score = 1029 bits (557), Expect = 0.0 Identities = 823/951 (87%), Gaps = 19/951 (2%) Strand=Plus/Plus Query 248 AAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACGCT-GTTTTCCGGTGGTATTGTCAAT 306 |||||||||||||||||||| |||| || || ||| | || |||||||| | || ||||| Sbjct 205 AAAGGCCGTGTTAGTTTCATGGGCATTGGGACACG-TCGTCTTCCGGTGATTTTATCAAT 263 Query 307 G---G-GAAAGTCGGAG-ACTTTCGAGGAAGCTG-GAAATTCCGTTGCGCCTGGTAACGG 360 | | | | | ||||| | | ||||| |||| |||| || ||| |||||| || || Sbjct 264 GACAGCG-ACGGCGGAGTCCGGT-GAGGAGGCTGTGAAA-TCTGTTTTGCCTGGAAATGG 320 Query 361 CATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAGCGGC 420 |||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || Sbjct 321 CATATCCATCATGGTGAATGGATGTAGTGGCAAAATGGGGAAAGCTGTAATCAAAGCAGC 380 Query 421 AGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTGGCCA 480 ||| ||||| ||||| ||||||||||| | ||||||||| |||| || |||| ||| || Sbjct 381 AGACTCTGCAGGAGTAAATATTGTTCCCATATCATTTGGATCTGCTGGTGAGGATGGTCA 440 Query 481 GACTGTTGAGGTCTGTGGAAAGGAGATT-CTTGTGCATGGTCCTACTGAAAGAGAAAAGG 539 || |||||||||||||||||||||||| | |||||| |||||||||||||||||||||| Sbjct 441 GAGAGTTGAGGTCTGTGGAAAGGAGATTAC-TGTGCACGGTCCTACTGAAAGAGAAAAGG 499 Query 540 TGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTCCCT 599 | || ||||| |||||||||||| | || || |||||||||||||||||||||||||| | Sbjct 500 TTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAATTGTTGTGGACTACACAATTCCTT 559 Query 600 CTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGGGAA 659 ||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||| Sbjct 560 CTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGTAGGTGTTCCTTTCGTCATGGGAA 619 Query 660 CAACTGGAGGAGACAGG-ACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATGCT 718 ||||||| ||||| ||| |||| ||||||| ||||||| |||||| |||||||||||||| Sbjct 620 CAACTGGTGGAGATAGGAACAA-ATTGTATGAAACTGTTGAGGAAGCAAAGATTTATGCT 678 Query 719 GTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCATG 778 |||||||| ||||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct 679 GTGATTTCCCCACAGATGGGTAAACAGGTTGTAGCATTTCTTGCGGCCATGGAGATCATG 738 Query 779 TCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATCAA 838 ||||||||||||| || || ||| |||||||||| || || |||||||||||||||||| Sbjct 739 GCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCATTGGATGTGATGGAGTCTCATCAA 798 Query 839 GCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAATTA 898 |||||||||||||||||||| || || ||||||||||||||||||||||| ||| |||| Sbjct 799 GCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGTTATTTCTTGCTTCCAGGAATTG 858 Query 899 GGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG-A 957 || ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| | || | Sbjct 859 GGTGTGTCTTACGACATGGATCAGATACAATTGATTCGGGATCCAAAACAGCA-AGTGGA 917 Query 958 GGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGAC 1017 | ||||||||||||| || |||||| |||| || |||||||||||||||||||||||||| Sbjct 918 GATGGTGGGTGTTCCCGAAGAGCATATCTCTGGCCATGCTTTCCATCTTTATCACTTGAC 977 Query 1018 ATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATATA 1077 |||||| ||| ||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 978 ATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCATAATGTCTGCGGCAGATCAATATA 1037 Query 1078 TGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCT-AAAGCAG 1136 || ||||||||||||||||| ||||| ||||| ||||||||||| || | | ||||||| Sbjct 1038 CGCCGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAAAAAGATTCGAT-TGAAAGCAG 1096 Query 1137 AGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTT 1187 | || | ||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 1097 ATCAGCGAATCTACAACATGATCGATGTTTTGAGAGAGGGAAACATGCGTT 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54011967410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5