BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59900.1
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486454 jgi|Araly1|486454|fgenesh2_kg.5__2446__AT3G59900.1 1002 0.0
> Ahg486454 jgi|Araly1|486454|fgenesh2_kg.5__2446__AT3G59900.1
Length=721
Score = 1002 bits (542), Expect = 0.0
Identities = 669/727 (92%), Gaps = 21/727 (3%)
Strand=Plus/Plus
Query 1 TTGTCTTCCTCATTTCCCTACTAGTACT---T-GTTTCACACAGTTTC-TTGATCC-AAC 54
||| |||||||||||||||||||||||| | ||||||||||||||| || | || |||
Sbjct 1 TTGCCTTCCTCATTTCCCTACTAGTACTAGCTAGTTTCACACAGTTTCATT-A-CCAAAC 58
Query 55 CAAAACCAATACAC-AAAGCTTCTCAAACTCCTTCACCTCAAAGCTTCTTCCTTTACATC 113
| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 59 C-AAACCAAAACACAAAAGCTTCTCAAACTCCTTCACCTCAAAGCTTCTTCTTTTAAATC 117
Query 114 TGAATCGTTGAGTTAACTCGGATTTGTTCTGCATCCTCTGTTTCTGAATCGTGGGCCATC 173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 118 TGAATCGTTGAGTTAACTCGGATTTGTTCTGCATTCTCTGTTTCTGAATCGTGGGTCATC 177
Query 174 CTTATTTTGTCTCGAATTCTTCACCAATTGCTTCGATCAAGCTGCATTGGTTAACCAGTT 233
| | |||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 178 GTGA-TTTGTCTCGAATTCGTAACCGTTTGCTTCGATCAAGCTGCATTGGTTAACCAG-T 235
Query 234 GCCCT-AAAGATCAGATCTTTGAGCAAAATTTTGTCACTGATCTTCTAAATCCAAACCAG 292
||||| ||| | || |||||||||||||| |||||||| ||||||||||||| || |||
Sbjct 236 GCCCTAAAAAAACATATCTTTGAGCAAAA-TTTGTCACCGATCTTCTAAATCGGAATCAG 294
Query 293 ACACAGCAAAACAACCTC--T-G-TAGATGATTCGAGAAATCTCAAACTTACAAAAAGAT 348
|| ||||||||||| ||| | | ||||||||||| |||||||||||||||||||| |||
Sbjct 295 ACCCAGCAAAACAATCTCGTTAGATAGATGATTCGCGAAATCTCAAACTTACAAAACGAT 354
Query 349 ATTATAAACATTCAAGACAGTTATTCGAACAACCGAGTCATGGACGTCGGAAGAAACAAC 408
||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 355 ATTATTAACATTCAAGACCGTTATTCGAACAACGGAGTCATGGACGTCGGAAGAAACAAC 414
Query 409 CGGAAAAACATGAGCTTTCGAAGTTCGCCGGAGAAAAGCAAGCAAGAGTTACGGCGGAGT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CGGAAAAACATGAGCTTTCGAAGTTCGCCGGAGAAAAGCAAGCAAGAGTTACGGCGGAGT 474
Query 469 TTCTCGGCGCAGAAAAGGATGATGATCCCGGCGAATTATTTCAGTTTAGAGTCTCTGTTC 528
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTCTCGGCGCAGAAAAGGTTGATGATCCCGGCGAATTATTTCAGTTTAGAGTCTCTGTTT 534
Query 529 CTATTGGTTGGTCTAACGGCATCTCTGTTAATACTTCCGTTAGTTTTGCCGCCGTTACCT 588
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 535 CTATTGGTGGGTCTCACGGCGTCTCTGTTAATCCTTCCGTTAGTTTTGCCGCCGTTACCT 594
Query 589 CCGCCTCCGTTTATGCTGCTATTGGTTCCCATTGGGATTATGGTTTTACTCGTCGTTCTT 648
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 595 CCGCCTCCGTTTATGCTGCTTTTGGTTCCCATTGGGATTATGGTTTTACTCGTGGTTCTT 654
Query 649 GCCTTCATGCCTTCTTCTCATTCTAAT---GCTAATACAGATGTAACTTGCAATTTCATG 705
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||
Sbjct 655 GCCTTCATGCCTTCTTCTGATTCTAATAATGCTAATAGAGATGTAACTTGCAATTTTATG 714
Query 706 TAAATCT 712
|||||||
Sbjct 715 TAAATCT 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27219762738
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5