BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59930.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898951 jgi|Araly1|898951|Al_scaffold_0005_2917 350 1e-95
> Ahg898951 jgi|Araly1|898951|Al_scaffold_0005_2917
Length=243
Score = 350 bits (189), Expect = 1e-95
Identities = 226/244 (93%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 194 ATGGCAAAGAACCTCAACTCCGTTAGCTTCACCGTTCTCTTGCTGGTTCTTTTGGTGGCT 253
|||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 1 ATGGCAAAAAACATCAACTCCGTTAGTTTCACCGTTCTCTTGCTTGTTCTTTTGATGACT 60
Query 254 TCCACCGAAATCCTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCACCGAAATCGTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 120
Query 314 GAGCCGTTTACAGGTTCAAATGCTGATTGCTTAGCGTGTTGTGTAGCTCTCTACAAG-AG 372
||||| |||||||||||||||||||||||||| || ||||||||||| || |||| | ||
Sbjct 121 GAGCCATTTACAGGTTCAAATGCTGATTGCTTGGCCTGTTGTGTAGCACTTTACA-GTAG 179
Query 373 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAGTCCCGGCTCACTGCCATTGCTACAAATC 432
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 180 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAAACCCGGCTCACTGCCACTGCTACAAATC 239
Query 433 GTAA 436
|||
Sbjct 240 TTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5