BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59940.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486458 jgi|Araly1|486458|fgenesh2_kg.5__2450__AT3G59940.1 1916 0.0
Ahg483537 jgi|Araly1|483537|fgenesh2_kg.4__2597__AT2G44130.1 309 4e-83
> Ahg486458 jgi|Araly1|486458|fgenesh2_kg.5__2450__AT3G59940.1
Length=1394
Score = 1916 bits (1037), Expect = 0.0
Identities = 1200/1278 (94%), Gaps = 14/1278 (1%)
Strand=Plus/Plus
Query 100 GTAATAACTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGAGGAGATTTAATCCC 159
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 GTAATAATTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGGGGAGATTTAATCCC 60
Query 160 AGGGTTACCAGAGGAATTAGCAATTGAGTGTTTGGTTAGAGTTCCTTTTCAGTTTCATTC 219
||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 61 AGGATTACCAGAGGAATTAGCAATAGAGTGTTTGGTTAGAGTTCCTTTTCTGTTTCATTC 120
Query 220 TTCCATCAAATCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 279
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCATGAATTCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 180
Query 280 GGAACGGATAGGTTTTGGTAAAGCTGAATCTCTTCTCTGCCTTGTTCAACCTCTGACTTC 339
|||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 181 GGAACGGATAAGTTTTGGTAAAGCTGAATCTCTACTCTGTCTTGTTCAACCTCTGACTTC 240
Query 340 ACCACCGTCTCCGGCGATGATGGAAGGTGGTGAGATGAGTCag-a--agaagaaagagga 396
|||||||||||||| |||||| || ||||||||||||||| || | ||||||||| |||
Sbjct 241 ACCACCGTCTCCGGTGATGATTGACGGTGGTGAGATGAGTGAGAAGCAGAAGAAAGTGGA 300
Query 397 agaagaagGCGAGTCTCAGATGACGCAGCAGCTGCTACAACCGCGTATTACTGGAACGCC 456
|||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 301 AGAAGAAGGCGAGTCTCAGATGACGCAGCA---G------CCGCGTGTTACTGGAACGCC 351
Query 457 ACTTTACGGTTTAAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 516
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ACTTTACGGTTTGAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 411
Query 517 TGAACGGATTCCTTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAAAGTGTTGTT 576
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 412 TGAACGGATTCCTTTGTTCTGCGAGTGCGTTGCGATTCAGGACGCTGGGAAAGTGTTGTT 471
Query 577 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGCGAGATGTTTTTGTTCTGGATTT 636
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 472 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGAGAGATGTGTTTGTTTTGGATTT 531
Query 637 CTTCGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAGGCAGGCCGATGTCGGCGGCGAG 696
|||||||||||||||||||||| | |||| |||||||| | |||||||||||||||||
Sbjct 532 CTTCGCCGGAGAAGGAAGCGGACGGAGGTGGAGAAGAGGGAAACCGATGTCGGCGGCGAG 591
Query 697 ATCGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGA 756
||||||||| || || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 592 ATCGTTTTTTGCTTGCGCGTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGTCATGA 651
Query 757 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTC 816
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 652 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTGGAGAAAGATGAGTGGTC 711
Query 817 GATGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 876
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 712 GACGATTCCTCCGATGACGGAAGGTAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 771
Query 877 TCCTGGATTTTGTGTTTTGAGCGGTTATGGAACGGAGACGCAAGGCCAATTCCGATCTGA 936
| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 772 TTTTGGATTTTGTGTGTTGAGCGGTTACGGAACGGAGACGCAGGGCCAATTCCGATCTGA 831
Query 937 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAGAATGTCTGGCCGTT 996
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 832 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAAAATGTATGGCCGTT 891
Query 997 TCCCGATTTGAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAATTCC-CCGGAGATT 1055
||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 892 TCCTGATTTAAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAA-TCCGCCGGAGATT 950
Query 1056 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCATTGGG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCGTTGGG 1010
Query 1116 AAGTTGAAGACGATTCGATGAAATGGAAGGTAATTATGGATACGATTCGGCTTCCGGTGA 1175
|| |||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1011 AAATTGAGGACGATTCGATGAAATGGAAGGTAGTTATGGAGACGATTCGGCTCCCGGTGA 1070
Query 1176 CGACGATGACTTCGGTTTTTGCTGGAAGTTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1235
|||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1071 CGACGATGACGTCGGTTTTCGCAGGAAGCTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1130
Query 1236 GTGGTGGTGAAGAAAGTGGAACGATGATGGTGAAGACGACGGCGGAGAAGAATGGCGGGA 1295
|||| |||||||||||||| ||||||||| |||||||||||||||| || ||||||||||
Sbjct 1131 GTGGCGGTGAAGAAAGTGGGACGATGATGATGAAGACGACGGCGGAAAATAATGGCGGGA 1190
Query 1296 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1250
Query 1356 TCTACGTTTGAAGAATCT 1373
|||||||||||||| |||
Sbjct 1251 TCTACGTTTGAAGATTCT 1268
> Ahg483537 jgi|Araly1|483537|fgenesh2_kg.4__2597__AT2G44130.1
Length=1383
Score = 309 bits (167), Expect = 4e-83
Identities = 447/575 (78%), Gaps = 47/575 (8%)
Strand=Plus/Plus
Query 470 AGCGTTTATAACGCAACGCTGGACACGTGGCACCG-AGTCGCGATT-CC--TGA--A-CG 522
|||||||| ||| | ||||| |||||||||||| | ||||| || || || | |
Sbjct 429 AGCGTTTACAACTCCGCGCTGTCCACGTGGCACCGCA-TCGCGTTTCCCGAGGAGGAGCA 487
Query 523 GATTCC-TTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAA-AGTGTTGTTAATC 580
||| || || |||||||| ||||| | | |||||||||| ||||| | | || | |||
Sbjct 488 GATCCCGCTT-TTCTGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTT-CTCATC 545
Query 581 GGCGGTTGGGATCCGGAGACGTTGCAGCCTG-TGCGAGATGTTTTTGTTCTGGATTTCTT 639
||||||||||||||||||||||| ||||| | | |||| ||| |||||||| ||
Sbjct 546 GGCGGTTGGGATCCGGAGACGTTACAGCC-GACGAGAGACGTTCACGTTCTGGA---ATT 601
Query 640 CGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAG-GCAGGCCGATGTCGGCGGCGAGAT 698
|||| | |||||||| || || | | | || | || ||||||| || || |||
Sbjct 602 CGCC-G-GAAGGAAGTGG-AG-A----C-G-AG-GTGC--GCCGATGAAGGAATCGCGAT 648
Query 699 CGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGATG 758
|||| ||||| || || || || ||||| || ||||| |||||||||||||| || || |
Sbjct 649 CGTTCTTCGCTTGCGCCTCCGTCGGTTCAACTAAGGTATACGTCGCCGGAGGTCACGACG 708
Query 759 ATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTCGA 818
||||||| |||||| | || |||||||| |||||||| || |||||||||||||||||||
Sbjct 709 ATCAGAAAAACGCTTTACGCTCGGCGGAGGTGTACGACGTCGAGAAAGACGAGTGGTCGA 768
Query 819 TGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGAT-GGCGACGGAT 877
| |||||||||||||||||||||||||||| ||||| |||||| | || || ||||||
Sbjct 769 CGGTTCCTCCGATGACGGAAGGAAGAGACGAATGTCAAGGATTCGCCATTGGT-ACGGAT 827
Query 878 CCT--GGATTTTGTGTTTTGAGCGGTTATGGAACGGAGA-CGCAAGGCCA-ATTCCGATC 933
| | || ||||| || ||||| ||||| |||||||| | | ||||| | |||||||||
Sbjct 828 C-TAAGG-TTTTGCGTATTGAGTGGTTACGGAACGGA-ATCTCAAGGA-AGATTCCGATC 883
Query 934 TGACGGCGAGATTTACGATCC-GATTACGAATTCATGGTCGACAATCGAGAATGTCTGGC 992
|||||| ||||||||||| || | | || ||||| ||||| | |||||| || |||||
Sbjct 884 TGACGGAGAGATTTACGAGCCAGCT-ACAAATTCCTGGTCCAAAATCGAAAACATCTGGA 942
Query 993 CG-TTTCCCGATT-TGAGTCCGAGAGGTCGCACCG 1025
| ||||| ||| | || ||||||||||||||||
Sbjct 943 -GATTTCCAGATACT-AGCCCGAGAGGTCGCACCG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5