BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59950.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486460 jgi|Araly1|486460|fgenesh2_kg.5__2452__AT3G59950.1 2870 0.0
Ahg935334 jgi|Araly1|935334|scaffold_403322.1 1162 0.0
> Ahg486460 jgi|Araly1|486460|fgenesh2_kg.5__2452__AT3G59950.1
Length=1782
Score = 2870 bits (1554), Expect = 0.0
Identities = 1718/1795 (96%), Gaps = 19/1795 (1%)
Strand=Plus/Plus
Query 1 AATGATCCATATTCGAAGCTTAAAAGATATAATTACGTAAAATagagaagagagagagag 60
||| ||||||||||||||||| ||| ||||||||||||||| || ||| ||||||||
Sbjct 1 AATCATCCATATTCGAAGCTT--AAG--ATAATTACGTAAAAT--AG-AGA-AGAGAGAG 52
Query 61 agaACACGAAAC-TTTTATTTCGTAAGGTTACACGAAATCGATCTTCCGCAATTCAAACT 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AGAACACGAAACTTTTTATTTCGTAAGGTTACACGAAATCGATCTTCCGCAATTCAAACT 112
Query 120 TCGTCTCCGTTAATTCGCACTCTCGTTCTCGTCTTCGTCGCCGGAGGTCGTATCAAGTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TCGTCTCCGTTAATTCGCACTCTCGTTCTCGTCTTCGTCGCCGGAGGTCGTATCAAGTCA 172
Query 180 GCCTCAACGATCCGATTTGTTTTTTCAGACAAAGG-TTG-A-TTCTCTGGGTATGAGTTT 236
||||| |||||||||||||| |||||||||||||| | | | |||| |||| |||||
Sbjct 173 GCCTCGACGATCCGATTTGTATTTTCAGACAAAGGAAGGAAGAT-TCTGAGTATTAGTTT 231
Query 237 TCTTCTATGAGACAGACATGTTGTATTTGGTGCTTAATGACTAGGTAATGAAGGCTATAT 296
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 232 TCTTCTATGAGACAGACATGTTGCATTTGGTACTTAATGACTAGGTAATGAAGGCTATAT 291
Query 297 GTGATAGATTTGTTCCTTCAAAATGTTCTTCATCAAGCACAAGTGAAAAGCGTGATATAT 356
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 292 GTGATAGATTTGTTCCTTCAAAATGTTCTTCATCATGCACAAGTGAAAAGCGTG--ATAT 349
Query 357 CATCCCCGACATCTCTAGTTTCAGATTC-CGCGTCTAGTGATAACAAGTCAAACTTGACG 415
||||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 350 -ATCCCAGACATCTCTAGTTTCAGATTCAC-CGTCTAGTGACAACAAGTCAAACTTGACG 407
Query 416 TTATGCTCGGATGTGGTTGCCTCTTCCTCCCCAGTTTCTCAACTGTGTAGGGAAGCTTCA 475
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 408 TTATGCTCGGATGTGGTTGCGTCTTCCTCCCCAGTTTCTCAACCGTGTAGGGAAGCTTCA 467
Query 476 ACTTCAGGGCATAACCCAGTTTGCACCACACATAGTAGTTGGACAGTTATTTTAAAAACA 535
||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 468 ACTTCCGAGCATAAGCCAGTTTGCACCACACATAATAGTTGGACAGTTATTTTAAAAACA 527
Query 536 GCTTCTATGGCTAGCGGGGCAATTAGGAGATTTCAAGACCGTGTATTAGGGCCGAGTAGG 595
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GCTTCTATGGCTAGTGGGGCAATTAGGAGATTTCAAGACCGTGTATTAGGGCCGAGTAGG 587
Query 596 ACGGGTATTTCCAGCAGTACTAGTGAGATATGGCTCCTGGGTGTCTGTTATAAAATCTCA 655
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 588 ACGGGTATTTCCAGCAGTACAAGTGAGATATGGCTCCTGGGTGTCTGTTATAAAATCTCA 647
Query 656 GAGGGTGAATCCTCAGAAGAAGCAGATGCTGGCCGTGTATTGGCCGCATTCAGACAAGAT 715
|||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 648 GAGGCTGAATCCTCCGAAGAAGCAGATGCTGGCCGTGTATTGGCTGCATTCAGACAAGAT 707
Query 716 TTTTCATCCTTAATACTGATGACATATCGTAGAGGTTTTGAGCCTATTGGAGACACAACT 775
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTTTCATCCTTAATACTAATGACATATCGTAGAGGTTTTGAGCCTATTGGAGACACAACT 767
Query 776 TATACTAGTGATGTAAACTGGGGTTGCATGCTTCGAAGCGGCCAGATGCTCTTCGCACAG 835
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 768 TATACTAGTGATGTAAACTGGGGTTGCATGCTTCGAAGTGGCCAGATGCTCTTTGCACAG 827
Query 836 GCGTTGCTATTTCAAAGGCTGGGAAGGTCTTGGAGGAAAAAGGATTCCGAGCCCGCGGAT 895
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 828 GCGTTGCTATTCCAAAGGCTGGGAAGGTCTTGGAGGAAAAAGGATTCCGAGCCTGCGAAT 887
Query 896 GAGAAATACTTAGAGATCTTAGAACTTTTTGGTGATACTGAGGCTTCAGCATTCTCGATT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GAGAAATACTTAGAGATCTTAGAACTTTTTGGTGATACTGAGGCTTCAGCATTCTCGATT 947
Query 956 CACAATCTTATACTAGCTGGAGAATCTTATGGCCTGGCTGCTGGGTCATGGGTAGGACCA 1015
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 948 CACAATCTTATACTAGCTGGAGAATCCTATGGCCTGGCTGCTGGGTCATGGGTAGGACCA 1007
Query 1016 TATGCTGTTTGTCGATCATGGGAATCATTAGCTCGGAAGAACAAAGAAGAAACTGATGAT 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 TATGCTGTTTGTCGATCATGGGAATCATTAGCTCGGAAGAACAAAGAAGAAACTGATGTT 1067
Query 1076 AAGCACAAGTCGTTTTCCATGGCTGTTCATATCGTTTCTGGCAGTGAAGACGGAGAGAGA 1135
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1068 AAACACAAGTCGTTTTCCATGGCTGTTCATATCGTTTCTGGCAGTGAAGATGGAGAGAGA 1127
Query 1136 GGTGGAGCTCCAATTCTCTGTATTGAAGATGTCACCAAAACTTGTTTGGAATTTTCAGAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GGTGGAGCTCCAATTCTCTGTATTGAAGATGTCACCAAAACTTGTTTGGAATTTTCAGAA 1187
Query 1196 GGAGAAACTGAGTGGCCGCCAATTCTTCTCTTGGTCCCTCTGGTTCTCGGGCTTGACAGA 1255
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1188 GGGGAAACTGAGTGGCCGCCAATTCTTCTCTTGGTCCCTCTGGTTCTCGGGCTTGACAAA 1247
Query 1256 GTGAACCCCAGGTACATTCCATCTCTGATAGCCACTTTCACGTTCCCTCAAAGCCTCGGC 1315
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1248 GTGAACCCCAGGTACATTCCGTCTCTGATAGCCACTTTCACATTCCCTCAAAGCCTCGGC 1307
Query 1316 ATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGT 1367
Query 1376 TTCTACCTTGATCCGCATGATGTTCAACAGGTAGTGACAGTCAAGAAAGAAAATCAAGAT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TTCTACCTTGATCCGCATGATGTTCAACAGGTAGTGACAGTCAAGAAAGAAAATCAAGAT 1427
Query 1436 GTTGACACATCGTCTTACCATTGCAATACCCTCCGTTATGTTCCACTTGAGTCACTCGAC 1495
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1428 GTTGACACATCGTCTTACCATTGCAATACCCTCCGTTATGTTCCGCTTGAGTCACTCGAC 1487
Query 1496 CCGTCACTAGCTCTCGGATTCTATTGCCAGCACAAAGATGATTTTGATGATTTCTGTATC 1555
|||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1488 CCGTCACTAGCTCTTGGATTCTATTGCCAGGACAAAGATGATTTCGATGATTTCTGTATC 1547
Query 1556 CGAGCAACAAAGCTAGCCGGAGACTCTAATGGTGCTCCTCTCTTCACTGTGACTCAATCT 1615
|||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1548 CGAGCAACGAAGCTAGCGGGGGACTCTAATGGCGCTCCTCTCTTTACTGTGACTCAATCT 1607
Query 1616 CACAGAAGAAATGACTGCGGGATTGCAGAAACCAGCAGCAGTACAGAGACATCTACAGAG 1675
||||||| ||||||||| || |||||||||||||||||||| |||| || ||||||||||
Sbjct 1608 CACAGAACAAATGACTGTGGAATTGCAGAAACCAGCAGCAGCACAGTGATATCTACAGAG 1667
Query 1676 ATCTCTGGTGAGGAACATGAAGATGACTGGCAATTACTTTGAACACTTCTCCTAGCCATT 1735
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1668 ATCTCTGGTGAGGAACATGAAGATGACTGGCAATTACTTTGAACTCTTTTACTAGCCATT 1727
Query 1736 CT-TTTCATTGTGTGACTTTGTTCAATTATCAAAATACCATTCTTTTTACATCGA 1789
|| ||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1728 CTATTTCATTGTGTGACTTTGTTCAATTGTCAAAATACCATTCTTTTTACACCGA 1782
> Ahg935334 jgi|Araly1|935334|scaffold_403322.1
Length=1445
Score = 1162 bits (629), Expect = 0.0
Identities = 1139/1380 (83%), Gaps = 56/1380 (4%)
Strand=Plus/Plus
Query 263 TTGGTGCTTAATGACTAGGTAATGAAGGCTATATGTGATAGATTTGTTCCTTCAA-AATG 321
||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 1 TTGGTGCTTCATGTCTAGGTAATGAAGGCTTTATGTGATAGATTTGTTCC-TCAACAATG 59
Query 322 TTCTTCATCAAGCACA-AGTGAAAAGCGTGATATATCATCCCCGACATCTCTAGTTTCAG 380
|||||||||||||| | ||||| | || ||||| | || || | || |||||||||
Sbjct 60 TTCTTCATCAAGCA-AGAGTGATACGCATGATA-A--AT--CC--C--CTGTAGTTTCAG 109
Query 381 ATTCCGCG-TCTAGTGATAACAAGTCAAACTTGACGTTATGCTCGGATGTGGTTGCCTCT 439
|||| | | |||||||||| ||||| || || || ||||| || | || || | |||
Sbjct 110 ATTCAG-GACCTAGTGATAATAAGTCCAAGTTTACCTTATGGTCAAACGTCTTTACGTCT 168
Query 440 TCCTCCCCAGTTTCTCAACTGTGTAGGGAAG-CTTCAACTTCAGGGCATAACCCAGTTTG 498
|| ||| |||||||||||| || ||||| || |||||||||| |||||||| ||||||
Sbjct 169 TCTTCCTCAGTTTCTCAACCGTATAGGG-AGTCTTCAACTTCTGGGCATAAGAAAGTTTG 227
Query 499 CACCACACATAGTAGTTGGACAGTTATTT-TAAAAACAGCT-TCTATGGCTAGC-GGGGC 555
|||||| | || | ||||||||| |||| |||||| || | |||||||||| | || ||
Sbjct 228 CACCACTCGTAATGGTTGGACAG-CATTTGTAAAAAGAG-TCTCTATGGCTA-CTGGCGC 284
Query 556 AATTAGGAGATTTCAAGACCGTGTATTAGGGCCGAGTAGGACGGGTATTTCC-AGCAGTA 614
|||||||||||| || || ||||| |||||||| | |||||| ||| | || |||| |
Sbjct 285 AATTAGGAGATTCCAGGAGCGTGTTTTAGGGCCAAATAGGACTGGT-CTGCCGAGCACAA 343
Query 615 CTAGTGA-GATATGGCTCCTGGGTGTCTGTTATAAAATCTCAGAGGGTGAATCCTCAGAA 673
| ||||| | |||||||| ||||||||||||| ||||| || |||| ||| |||| |
Sbjct 344 CAAGTGATG-TATGGCTCTTGGGTGTCTGTTACAAAATATCCGAGGATGAGGCCTCGGGG 402
Query 674 G-AAGCAGATGCTGGCCGTGTATTGGCCGCA-TTCAGACAAGATTTTTCATCCT-TAATA 730
| || || || ||||| |||||||||| ||| |||| |||||||||||||| || ||||
Sbjct 403 GAAACCA-ATACTGGCTGTGTATTGGCTGCATTTCA-ACAAGATTTTTCAT-CTAAAATA 459
Query 731 CTGATGACATATCGTAGAGGTTTTG-AGCCTATTGGAGACACAACTTATACTAGTGATGT 789
||||||||||| ||||||||||||| | ||| || |||||||||| ||||| || |||||
Sbjct 460 CTGATGACATACCGTAGAGGTTTTGAACCCT-TTAGAGACACAACATATACCAGCGATGT 518
Query 790 AAACTGGGGTTGCATGCTTCGAAGCGGCCAGATGCTCTTCGCACAGGCGTTGCTATTT-C 848
||||||||||||||| ||||||| |||||||||| || || ||||||||||| ||| |
Sbjct 519 GAACTGGGGTTGCATGATTCGAAGTAGCCAGATGCTTTTTGCTCAGGCGTTGCT-TTTCC 577
Query 849 AAAGGCTGGGAAGGTCTTGGAGGAAAAAGGATTCCGAGCCCG-CGGATGAGAAATACTTA 907
| ||| |||| |||||||||| || || | || ||| | | | || || ||||||||
Sbjct 578 ATAGGGTGGGGAGGTCTTGGACTAAGAA--A-TCTGAG-CTGCCTGAACAGGAATACTTA 633
Query 908 GAGATCTTAGAACTTTTTGGTGATACTGAGGCTTCAGCATTCTCGATTCACAATCTTATA 967
|||| ||| |||| |||||||||| | ||| ||||||| ||||| || ||||||||||||
Sbjct 634 GAGACCTTGGAACCTTTTGGTGATTCCGAGTCTTCAGCTTTCTCCATCCACAATCTTATA 693
Query 968 CTAGCTGGAGAATCTTATGGCCTGGCTGCTGGGTCATGGGTAGGACCATATGCTGTTTGT 1027
||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||
Sbjct 694 ATAGCTGGAGCGTCCTATGGTCTCGCTGCTGGGTCATGGGTAGGGCCATATGCCATTTGT 753
Query 1028 CGATCATGGGAATCATTAGC-TCGGAAGAACA-AAGAAGAAACTGATGATAAGCACAAGT 1085
||| | |||||||||||||| | | ||||| | || || |||||||| ||| || ||
Sbjct 754 CGAGCGTGGGAATCATTAGCGT-GCAAGAAGAGAA-AACAAACTGATTCTAAAAACCAGA 811
Query 1086 CGTTTTCC-ATGGCTGTTCATATCGTTTCTGGCAGTGAAGACGGAGAGAGAGGTGGAGCT 1144
|| |||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 812 CG-CTTCCTATGGCTGTTCATATTGTTTCTGGCAGCGAAGATGGAGAGAGAGGTGGGGCT 870
Query 1145 CCAATTCTCTGTATTGAAGATGTCACCAAAACTTGTTTGGAATTTTCAGAAGGAGAAACT 1204
|||||||||||||| ||||||| ||||||| ||||| | ||||| ||| ||||| | ||
Sbjct 871 CCAATTCTCTGTATAGAAGATGCCACCAAATCTTGTCTAGAATTCTCAAAAGGACAGTCT 930
Query 1205 GAGTGGCCGCCAATTCTTCTCTTGGTCCCTCTGGTTCTCGGGCTTGACAGAGTGAACCCC 1264
|||||| | || ||||| || |||||||| |||||||||||||||||||| ||||| |||
Sbjct 931 GAGTGGACACCGATTCTCCTTTTGGTCCCACTGGTTCTCGGGCTTGACAGTGTGAATCCC 990
Query 1265 AGGTACATTCCATCTCTGATAGCCACTTTCACGTTCCCTCAAAGCCTCGGCATTTTGGGC 1324
||||||||||||||||| |||||||| ||||| || ||||| ||| | || ||||||||
Sbjct 991 AGGTACATTCCATCTCTCATAGCCACATTCACTTTTCCTCAGAGCGTAGGGATTTTGGGT 1050
Query 1325 GGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTT 1384
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1051 GGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAAGACAAAGGTTTCTACCTT 1110
Query 1385 GATCCGCATGATGTTCAACAGGTAGTGACAGTCAAGAAAGAAA-ATCAAGATGTTGACAC 1443
||||||||||| ||||||||||| || |||||||| || |||| | || |||||||||||
Sbjct 1111 GATCCGCATGAAGTTCAACAGGTGGTCACAGTCAACAAGGAAACACCA-GATGTTGACAC 1169
Query 1444 ATCGTCTTACCATTGCAATACCCTCCGTTATGTTCCACTTG-AGTCACTCGACCCGTCAC 1502
||| || || ||||||||| | | ||||||||||| ||| | ||||||||||| || |
Sbjct 1170 ATCCTCCTATCATTGCAATGTCATTCGTTATGTTCCT-TTGGAATCACTCGACCCATCTC 1228
Query 1503 TAGCTCTCGGATTCTATTGCCAGC-ACAAAGATGATTTTGATGATTTCTGTATCCGAGCA 1561
||||||||||||||||||||| || ||||||||||||| || || |||||| ||||||||
Sbjct 1229 TAGCTCTCGGATTCTATTGCC-GCGACAAAGATGATTTCGACGACTTCTGTCTCCGAGCA 1287
Query 1562 ACAAAGCTAGCCGGAG-ACTCTAATGGTGCTCCTCTCTTCACTGTGACTCAATCTCACAG 1620
|||| ||||||| || | || || |||||||| || ||||| | |||||| | |||||
Sbjct 1288 TCAAAACTAGCCG-AGGATTCAAACGGTGCTCCACTATTCACCATAACTCAAACCCACAG 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5