BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59960.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 1517 0.0
Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 579 2e-164
> Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1
Length=1064
Score = 1517 bits (821), Expect = 0.0
Identities = 990/1070 (93%), Gaps = 18/1070 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCCTCGAAGAAGGGTTCCGATCGGAATCAAATCAGGAAGTCGTTGAGGAAGTTA 60
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCTTCCTCCAAGAAGGGTTCCGATCGGAATCAAATCAGGAAATCGTTGAGGAAGTTG 60
Query 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAA--T-CTCCGGATCGGTTGAATAATGTG 117
||||||||||||||||||||||||||||||||| | ||||||| | ||||||||| | |
Sbjct 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAATCTCCTCCGGAGCCGTTGAATAAAGGG 120
Query 118 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAAGAAAGTTAAG 177
|||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 121 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAA 180
Query 178 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGTTCTTCAACTCTTTGTGGCAGC 237
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 181 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGCTCTTCAACTATTTGTGGCAGT 240
Query 238 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGTGAA 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGAA 300
Query 298 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 360
Query 358 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAACTCAGGAGAGTTTATCATTGAA 417
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAATTCAGGAGAGTTTATCATTGAA 420
Query 418 TATGT-GGG-A-GAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 474
||||| ||| | | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 480
Query 475 CATAAGGTCGAGACAAATTTCTATTTGTGTCAGATAAACTGGAACATGGTGATTGATGCT 534
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CATAAGGTCGAGAAAAATTTCTATTTGTGTCAGATTAACTGGAACATGGTGATTGATGCC 540
Query 535 ACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAGAGATG 594
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 ACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACAGAGATG 600
Query 595 CAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCATAAAC 654
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 601 CAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTTGCTACCCGTTTCATAAAC 660
Query 655 AAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 714
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 720
Query 715 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAGG 780
Query 775 ACAACCTTAGAAGAAGCTGTGAAGCCAGTGGCATGTAAAGTGACCTGGAAAACGCCCAAG 834
||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 781 ACAACCTCGGAAGAAGCTGTGAAACCAGTGGCATGTAAAGTAACATGGAAAACGCCCAAG 840
Query 835 CTTCTCA--ATTCAGAGGTAAGAGAAACCAATTTGGATGCGTCAGGACAAGCTTGGAACA 892
|| | || | | | || || |||||||||||||||||||| ||||||||||||
Sbjct 841 ATTATTTGGAT-CT-ATTTTCGACAAGCCAATTTGGATGCGTCAGGAAAAGCTTGGAACA 898
Query 893 ATCAT-AGCCAGAGGAAAATATGTTGCCGGGACTGCATTGGTGCG--TATTA-CACGGCT 948
| ||| |||||||||||||||||||||||||| |||||||||||| | || || |
Sbjct 899 A-CATTAGCCAGAGGAAAATATGTTGCCGGGATTGCATTGGTGCGGCTGTTGTCAT---T 954
Query 949 CAGATGAAGGTTTTGACTCTAGTAGTTGACATTTTTCAGGTCATGTATGAGGATGGTGTT 1008
|| | || ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 AAGGGGCAGTTTTTGACAGTAGTAGTTGACATTTTCCAGGTCATGTATGAGGATGGTGTT 1014
Query 1009 ACCGAGATCATCGACATGTGCAGAGAAGTTTGGAAGGTTGTAACTGCTTG 1058
|||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1015 ACCGAGATTATCGACATGTGCAGAGAAGTTTGGATGATTGTAACTGCTTG 1064
> Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1
Length=1465
Score = 579 bits (313), Expect = 2e-164
Identities = 551/664 (83%), Gaps = 24/664 (4%)
Strand=Plus/Plus
Query 123 TATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAA-GAAAGTT-AAGGAT 180
||||||||||| ||||||||||||||||| ||||||| |||| || || ||| || |||
Sbjct 390 TATCTTCATCAGGCGCAATATATACTTGACGAAGAAAGTCAA-AAGGAGGGTTGAA-GAT 447
Query 181 CATGGCATATTCTGTTCTTG--C-TCCTTGGATCCTGG---TTCTTCAACTCTTTGTGGC 234
|||| || ||||||||||| | |||| | |||||| |||||||||| | |||||
Sbjct 448 GATGGAATCTTCTGTTCTTGCTCTTCCTCGTCTCCTGGTTCTTCTTCAACTGTGTGTGGA 507
Query 235 AGCGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGT 294
|| ||||| |||||||||| ||| ||||||||||||| || |||||||| || | |||
Sbjct 508 AGTAATTGCCATTGTGGGATGCTATTCTCAAGCTGTTCCTCAAGTTGCAAGTGTGGGAGT 567
Query 295 GAATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACA 354
|| || | ||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 568 GAGTGTAACAATAAGCCGTTCCAACAACGGCATGTCAAGAAGATGAAGTTAATTCAGACA 627
Query 355 GAGAAATGTGGAT-ATGGGATTGTAGCAGATGAAGATATC-AACTCAGGAGAGTTTATCA 412
|| ||||| |||| | |||||||| ||||| ||||| ||| ||| |||||||||||||||
Sbjct 628 GAAAAATGCGGATCA-GGGATTGTGGCAGAAGAAGAAATCAAAC-CAGGAGAGTTTATCA 685
Query 413 TTGAATATGTGGGAGAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGA 472
|||||||||| |||||||||||||| || |||| ||||||||| |||||||||||| |||
Sbjct 686 TTGAATATGTCGGAGAAGTTATTGATGATAAGACTTGTGAAGAGAGGCTTTGGAAGATGA 745
Query 473 ATCATAAG-GTCGAGACAAA-TTTCTATTTGTGTCAGATAAACTGGA-ACATGGTGATTG 529
| || | | ||||||||| ||| ||||| ||| |||| ||| || | ||||||||||
Sbjct 746 AACA-CCGTGGCGAGACAAACTTT-TATTTATGTGAGAT-AACCAGAGATATGGTGATTG 802
Query 530 ATGCTACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAG 589
|||||||||| ||||| || ||||||||||| || ||||| ||||||| || || |||
Sbjct 803 ATGCTACTCATAAGGGAAACAAATCAAGATATATTAATCATAGCTGCAACCCGAATACAC 862
Query 590 AGATGCAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCA 649
|||||||||||||||||||||| |||||||| ||||| |||||||| || || ||| ||
Sbjct 863 AGATGCAGAAATGGATAATTGACGGCGAGACCAGAATTGGCATTTTCGCCACACGTGGCA 922
Query 650 -TAAACAAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAA 708
|||| || || ||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 923 TTAAA-AAGGGAGAGCATTTGACCTATGATTATCAGTTTGTTCAGTTTGGTGCAGATCAA 981
Query 709 GATTGCTACTGTGGTGCAGT-GTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAAC 767
|| ||| | ||||| || || | ||||||||| ||||| |||| ||||||| | ||| |
Sbjct 982 GACTGCCATTGTGGGGCTGTAG-GTTGCAGAAGGAAGCTTGGTGTAAAACCTAGTAAACC 1040
Query 768 TAAG 771
||||
Sbjct 1041 TAAG 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5