BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59960.1 Length=1059 Score E Sequences producing significant alignments: (Bits) Value Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 1517 0.0 Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 579 2e-164 > Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 Length=1064 Score = 1517 bits (821), Expect = 0.0 Identities = 990/1070 (93%), Gaps = 18/1070 (2%) Strand=Plus/Plus Query 1 ATGTCTTCCTCGAAGAAGGGTTCCGATCGGAATCAAATCAGGAAGTCGTTGAGGAAGTTA 60 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGTCTTCCTCCAAGAAGGGTTCCGATCGGAATCAAATCAGGAAATCGTTGAGGAAGTTG 60 Query 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAA--T-CTCCGGATCGGTTGAATAATGTG 117 ||||||||||||||||||||||||||||||||| | ||||||| | ||||||||| | | Sbjct 61 AAAAAGCAGATTGGGGAATTGGAGAAACTTGAATCTCCTCCGGAGCCGTTGAATAAAGGG 120 Query 118 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAAGAAAGTTAAG 177 |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct 121 AAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAA 180 Query 178 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGTTCTTCAACTCTTTGTGGCAGC 237 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 181 GATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGCTCTTCAACTATTTGTGGCAGT 240 Query 238 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGTGAA 297 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 GATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGAA 300 Query 298 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAG 360 Query 358 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAACTCAGGAGAGTTTATCATTGAA 417 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 AAATGTGGATATGGGATTGTAGCAGATGAAGATATCAATTCAGGAGAGTTTATCATTGAA 420 Query 418 TATGT-GGG-A-GAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 474 ||||| ||| | | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 TATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAAT 480 Query 475 CATAAGGTCGAGACAAATTTCTATTTGTGTCAGATAAACTGGAACATGGTGATTGATGCT 534 ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 481 CATAAGGTCGAGAAAAATTTCTATTTGTGTCAGATTAACTGGAACATGGTGATTGATGCC 540 Query 535 ACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAGAGATG 594 ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 541 ACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACAGAGATG 600 Query 595 CAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCATAAAC 654 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 601 CAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTTGCTACCCGTTTCATAAAC 660 Query 655 AAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 714 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGC 720 Query 715 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAAC 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAGG 780 Query 775 ACAACCTTAGAAGAAGCTGTGAAGCCAGTGGCATGTAAAGTGACCTGGAAAACGCCCAAG 834 ||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 781 ACAACCTCGGAAGAAGCTGTGAAACCAGTGGCATGTAAAGTAACATGGAAAACGCCCAAG 840 Query 835 CTTCTCA--ATTCAGAGGTAAGAGAAACCAATTTGGATGCGTCAGGACAAGCTTGGAACA 892 || | || | | | || || |||||||||||||||||||| |||||||||||| Sbjct 841 ATTATTTGGAT-CT-ATTTTCGACAAGCCAATTTGGATGCGTCAGGAAAAGCTTGGAACA 898 Query 893 ATCAT-AGCCAGAGGAAAATATGTTGCCGGGACTGCATTGGTGCG--TATTA-CACGGCT 948 | ||| |||||||||||||||||||||||||| |||||||||||| | || || | Sbjct 899 A-CATTAGCCAGAGGAAAATATGTTGCCGGGATTGCATTGGTGCGGCTGTTGTCAT---T 954 Query 949 CAGATGAAGGTTTTGACTCTAGTAGTTGACATTTTTCAGGTCATGTATGAGGATGGTGTT 1008 || | || ||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 955 AAGGGGCAGTTTTTGACAGTAGTAGTTGACATTTTCCAGGTCATGTATGAGGATGGTGTT 1014 Query 1009 ACCGAGATCATCGACATGTGCAGAGAAGTTTGGAAGGTTGTAACTGCTTG 1058 |||||||| ||||||||||||||||||||||||| | ||||||||||||| Sbjct 1015 ACCGAGATTATCGACATGTGCAGAGAAGTTTGGATGATTGTAACTGCTTG 1064 > Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 Length=1465 Score = 579 bits (313), Expect = 2e-164 Identities = 551/664 (83%), Gaps = 24/664 (4%) Strand=Plus/Plus Query 123 TATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAA-GAAAGTT-AAGGAT 180 ||||||||||| ||||||||||||||||| ||||||| |||| || || ||| || ||| Sbjct 390 TATCTTCATCAGGCGCAATATATACTTGACGAAGAAAGTCAA-AAGGAGGGTTGAA-GAT 447 Query 181 CATGGCATATTCTGTTCTTG--C-TCCTTGGATCCTGG---TTCTTCAACTCTTTGTGGC 234 |||| || ||||||||||| | |||| | |||||| |||||||||| | ||||| Sbjct 448 GATGGAATCTTCTGTTCTTGCTCTTCCTCGTCTCCTGGTTCTTCTTCAACTGTGTGTGGA 507 Query 235 AGCGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGT 294 || ||||| |||||||||| ||| ||||||||||||| || |||||||| || | ||| Sbjct 508 AGTAATTGCCATTGTGGGATGCTATTCTCAAGCTGTTCCTCAAGTTGCAAGTGTGGGAGT 567 Query 295 GAATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACA 354 || || | ||| ||||||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 568 GAGTGTAACAATAAGCCGTTCCAACAACGGCATGTCAAGAAGATGAAGTTAATTCAGACA 627 Query 355 GAGAAATGTGGAT-ATGGGATTGTAGCAGATGAAGATATC-AACTCAGGAGAGTTTATCA 412 || ||||| |||| | |||||||| ||||| ||||| ||| ||| ||||||||||||||| Sbjct 628 GAAAAATGCGGATCA-GGGATTGTGGCAGAAGAAGAAATCAAAC-CAGGAGAGTTTATCA 685 Query 413 TTGAATATGTGGGAGAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGA 472 |||||||||| |||||||||||||| || |||| ||||||||| |||||||||||| ||| Sbjct 686 TTGAATATGTCGGAGAAGTTATTGATGATAAGACTTGTGAAGAGAGGCTTTGGAAGATGA 745 Query 473 ATCATAAG-GTCGAGACAAA-TTTCTATTTGTGTCAGATAAACTGGA-ACATGGTGATTG 529 | || | | ||||||||| ||| ||||| ||| |||| ||| || | |||||||||| Sbjct 746 AACA-CCGTGGCGAGACAAACTTT-TATTTATGTGAGAT-AACCAGAGATATGGTGATTG 802 Query 530 ATGCTACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAG 589 |||||||||| ||||| || ||||||||||| || ||||| ||||||| || || ||| Sbjct 803 ATGCTACTCATAAGGGAAACAAATCAAGATATATTAATCATAGCTGCAACCCGAATACAC 862 Query 590 AGATGCAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCA 649 |||||||||||||||||||||| |||||||| ||||| |||||||| || || ||| || Sbjct 863 AGATGCAGAAATGGATAATTGACGGCGAGACCAGAATTGGCATTTTCGCCACACGTGGCA 922 Query 650 -TAAACAAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAA 708 |||| || || ||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 923 TTAAA-AAGGGAGAGCATTTGACCTATGATTATCAGTTTGTTCAGTTTGGTGCAGATCAA 981 Query 709 GATTGCTACTGTGGTGCAGT-GTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAAC 767 || ||| | ||||| || || | ||||||||| ||||| |||| ||||||| | ||| | Sbjct 982 GACTGCCATTGTGGGGCTGTAG-GTTGCAGAAGGAAGCTTGGTGTAAAACCTAGTAAACC 1040 Query 768 TAAG 771 |||| Sbjct 1041 TAAG 1044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39419096178 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5