BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59980.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939031 jgi|Araly1|939031|scaffold_503222.1 1421 0.0
Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3 388 4e-107
Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1 102 5e-21
> Ahg939031 jgi|Araly1|939031|scaffold_503222.1
Length=870
Score = 1421 bits (769), Expect = 0.0
Identities = 836/868 (96%), Gaps = 5/868 (1%)
Strand=Plus/Plus
Query 48 TTTTGAGCTACTCGAGGCATTTCCATGGCGGCGACGATAGCTGTTTT-TACCGGTGGTCT 106
||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||
Sbjct 1 TTTTGAGCTACTCGAGGCATTGCCATGGCGGCGACGTTAGCTGTTTTCT-CCGGTGGTCT 59
Query 107 GAAAGTGAAGGCTGGAGTTCTCGCCGTTCAAATCTCATCGCTTCCTCTCCGCCGCGAATT 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAGTGAAGGCTGGAGTTCTCGCCGTTCAAATCTCATCGCTTCCTCTCCGCCGCGAATT 119
Query 167 CCCTCGTTACTTGTCGTCTTCCTC---GAGGAGGACAGTAGCGGCAATCTCCTCGTCTCT 223
||||||||||||||||| ||| || ||||| ||||||| ||||||||||||| |||||
Sbjct 120 CCCTCGTTACTTGTCGTATTCGTCGAAGAGGACGACAGTACCGGCAATCTCCTCATCTCT 179
Query 224 TCGAGTCTCCGCCGTATATAACCATCAGCAGCGTAATCGAAGCTCTTGGCCTCGAGTTGC 283
|||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 180 TCGAATCTCCGCCGTTTATAACCATCACCAGCGTAATCGAAACTCTTGGCCTCGAGTTGC 239
Query 284 TACTTTCTGTACGGCGGCTCCAGATGCCGGCACGACGGTTTCAGCGGATGAATCGGAGAA 343
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACTTTCTGTACGGCGGCTCCCGATGCCGGCACGACGGTTTCAGCGGATGAATCGGAGAA 299
Query 344 GAAGAGCGAATCTCAGAAGGAAGAGGAGAATGTGAAGGAGACGGCGAATCTGTTAGATAT 403
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 300 GAAGAGCGAATCTCAGAAGGAGGAGGAGAATGTGAAGGAGACGGCGAATCTGTTAGATGT 359
Query 404 AAAAGTAGGACGAATTGTGAAAGCTTGGCAACACGAAGAAGCTGATTCTCTGTATGTTGA 463
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 AAAAGTAGGACGAATTGTGAAAGCTTGGCAACACGAGGAAGCTGATTCTCTGTATGTTGA 419
Query 464 AGAAGTCGACATCGGTGAAGCTGAGCCCAGAATCATCTGCAGTGGTCTCGTCAAATATGT 523
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 AGAAGTCGACATCGGTGAAGCTGAGCCCAGAATCATCTGTAGTGGTCTCGTCAAATATGT 479
Query 524 TCCTCTTGATCTCCTTCAGGGTGCATCAGTGGTGGTGCTGGCTAATCTGAAGCCGAGGAA 583
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCTCTCGATCTCCTTCAGGGTGCATCAGTGGTGGTGCTGGCTAATCTGAAGCCGAGGAA 539
Query 584 TATGAGAGGGGTTAAGTCATGTGGTATGCTTTTAGCTGCATCTGACGCAGCTCATGAAAA 643
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 540 TATGAGAGGGGTTAAGTCATGTGGTATGCTTCTAGCTGCATCAGACGCAGCTCATGAAAA 599
Query 644 TGTTGAGCTTCTTGTTCCACCAGAAGGCTCTGTTCCTGGAGATAGAGTTTGGTTTGGTAA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTGAGCTTCTTGTTCCACCAGAAGGCTCTGTTCCTGGAGATAGAGTTTGGTTTGGTAA 659
Query 704 CGAAGAAGATCTCGAGCAGCTTCCTGAACCTGCACCTCCTAATAAGGTTCAAAAGAAGAA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAAGAAGATCTCGAGCAGCTTCCTGAACCTGCACCTCCTAATAAGGTTCAAAAGAAGAA 719
Query 764 GATGTGGGAATTGGTGCAACCACTTTTGAAGACAGATGCGTCTGGTGTTTCAATGCTTAA 823
||| ||||||| ||||||||| ||||||||||| |||| |||||||||||| ||||||||
Sbjct 720 GATATGGGAATCGGTGCAACCGCTTTTGAAGACGGATGAGTCTGGTGTTTCGATGCTTAA 779
Query 824 GGAGCATTTGATGCGGACATCTTCTGGTCTTGTTACTTCCAAGTCTTTAAGAAATGCCAA 883
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 GGAGCATTTGATGCGGACATCTTCTGGTCTTGTTACTTCCAAGTCTTTACGAAATGCCAA 839
Query 884 CATTTCTTGATTTCTGTTAAAAGCTATT 911
||||||||||||||| ||||||||||||
Sbjct 840 CATTTCTTGATTTCTTTTAAAAGCTATT 867
> Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3
Length=2031
Score = 388 bits (210), Expect = 4e-107
Identities = 231/241 (96%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 938 GAAAGAACAAACCGCTAAGGCGAtttttttCATTGCAATCAAACTGATGTTTTTGTTGAT 997
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 GAAAGAACAGACCGCTAAGGCGATTTTTTTCATTGCAATCAAACTGATGTTTTTGTTGAT 1972
Query 998 TCATCAAAGTAAGGTTATTACGAATCAAAAATAACTTTAAAAGGTACAAAACAAATCTCG 1057
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1971 TCATCAAAATAAGGTTATTACGAATCAAAAGTAACTTTAAAAGGTACAAAACAAATCGCG 1912
Query 1058 AAATCGAATGTTTCCTCTTCGCCGGTGGTTTTCTCGGAGATCAAGCAAAGACAG-AGAAG 1116
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||
Sbjct 1911 AAATCGAATGTTTCCTCTTTGCCGTTGGTTTTCTCGGAGATCAAGCAAAGACAGCA-AAT 1853
Query 1117 ATATCACCATTGATGTAATTGTTGTCCACTAAGCTTACCAAATAGTAGCTGTTCTTCACC 1176
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 ATATCACCATTGATGTAATCGTTGTCCACTAAGCTTACCAAATAGTAGCTGTTCTTCACC 1793
Query 1177 T 1177
|
Sbjct 1792 T 1792
> Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1
Length=1953
Score = 102 bits (55), Expect = 5e-21
Identities = 80/92 (87%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1086 TTTTCTCGGAGATCAAGCAAAGACAGAGAAGATATCACCATTGATGTAATTGTTGTCCAC 1145
||||||| | ||| ||||||||| | ||| || | |||||||||||||| ||| |||||
Sbjct 1813 TTTTCTCAAATATC-AGCAAAGACCGCGAATATGTTACCATTGATGTAATCGTTCTCCAC 1755
Query 1146 TAAGCTTACCAAATAGTAGCTGTTCTTCACCT 1177
|||||||||||||||||||||||||||||||
Sbjct 1754 CAAGCTTACCAAATAGTAGCTGTTCTTCACCT 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5