BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60000.2
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486469 jgi|Araly1|486469|fgenesh2_kg.5__2461__AT3G60000.2 1936 0.0
> Ahg486469 jgi|Araly1|486469|fgenesh2_kg.5__2461__AT3G60000.2
Length=1419
Score = 1936 bits (1048), Expect = 0.0
Identities = 1307/1427 (92%), Gaps = 37/1427 (3%)
Strand=Plus/Plus
Query 36 TCGAAAAAGTTATGGAGGCGAAAACCAGCGGACCTAAGCAAATTCAGCCATCAACACCGG 95
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TCGAAAAAGTTATGGAGGAGAAAACCAGCGGACCTAAGCAAAATCAGCCATCAACACCGG 60
Query 96 CTCCTCCGCCTTCAACGCGGCGGCCAAGAGTTAGAGAAGTAAGTTCCAGATTCATGTCTC 155
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 CTCCTCCGCCTTCAACGCGGCGGCCAAGAGTTAGAGAAGTAAGATCTAGATTCATGTCTC 120
Query 156 CGGTTACTTCATCCTCTTCCTCCGCCGGAGATCTCCACTCTTTGAC-TTGTAATTCTCCA 214
|||||||||||||||||||||| ||||| |||||||||| |||||| | | |||||||||
Sbjct 121 CGGTTACTTCATCCTCTTCCTCTGCCGGCGATCTCCACTTTTTGACGTCG-AATTCTCCA 179
Query 215 AAGCAGCACCACC-T-----TCAACACCACCAGATTCAACGCTCTGTTTCTGCTCAGAGA 268
|| | ||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 GAGTACCACCACCTTCAACATCAACACCACCAGATTCAACGCTCTGTTTCGGCTCAAAGG 239
Query 269 CTTAGACGTCAGTTAAAAATGGCAGACGGAGATGAGAATCGCTCATCAGAGACGGCGGCG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTAGACGTCAGTTAAAAATGGCAGACGGAGATGAGAATCGCTCATCAGAGACGGCGGCG 299
Query 329 CGTAGCCTAGACTCGCCTTTTACACTCTCACAAAGCCGAAAATCATCGAAACCAAGTCAC 388
|||||||||||||||||||||||||||| |||||| ||||| |||||| || |||||||
Sbjct 300 CGTAGCCTAGACTCGCCTTTTACACTCTGGCAAAGCGGAAAAACATCGAGACAAAGTCAC 359
Query 389 TTGAAGCCGCTCAACGAGAATTCTCACCGGCTCGAAACTCCTACACCAATGGTTCCTCCT 448
||||||||||| || ||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 360 TTGAAGCCGCTTAAGGAGAATTCTCACCGGCTCGAAACTCCTACACCAATTG-T--TCCT 416
Query 449 CCACCGTCTAGATCACGGCTAAGCCAACAAAGATTAC---CAAC-T-----GCAACGAGA 499
|| |||||||||||||||||||| |||||| |||||| || | | |||||||||
Sbjct 417 CCGCCGTCTAGATCACGGCTAAGTCAACAACGATTACTAACAGCTTCCGCCGCAACGAGA 476
Query 500 CTTCTCCAACT-AAGCGGCATATCAGCCTGTTATGAGAAAGAAGGAATCATCAACATTCA 558
||||||||| | ||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 477 CTTCTCCAA-TCAAGCGGCATATCAGCCTCTAATGAGAAAGAAGGAATCATCAACACTCA 535
Query 559 GGAGAAACCTAAATCTAACGGCTCAGATCAGTTTCCAACACTTTCTTGTAGAACTCATCT 618
||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 536 AGAGAAACCTAAATATAACGGCTCAGATCATTTTCCGACACTTTCTTGTACAACTCATCC 595
Query 619 TAAAGTTTTCAACAATCCTGT-AC--CTTCTTCTCTTAATCGATCTGTGAGTTCACCA-T 674
|||||||||||| ||| | || | ||||||||||||||| || ||||||||||||| |
Sbjct 596 TAAAGTTTTCAATAATTCGGTGCCTTCTTCTTCTCTTAATCCATTTGTGAGTTCACCATT 655
Query 675 CTTCAAGCTGTAACGTTCGTGAGAGCAGTTCGTTTTCACGTTTAGGCTTGCCATTGCCTC 734
| ||| |||||||| ||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 656 GTCCAA-CTGTAACGGTCGTGAGAGCAGTTCATTTTCACGGTTAGGCTTGGCATTGCCTC 714
Query 735 CAATGGCACC-----C-AAGGTTCCAGCGGATACTAAAAAACAGAGGAAGGTTACAGAGC 788
| ||||||| | ||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 715 CGGTGGCACCGAATTCGAAGGTTCCAGCTGATACTAAAAAGCAGAGGAAGGTTTCAGAGC 774
Query 789 AATTGGAAGATGTGCATTCTCTGAAACTGCTCCACAATCGTTACCTCCAATGGAGATTTG 848
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 775 AATTGGAAGATGTGCATTCTCTGAAACTACTCCACAATCGTTACCTCCAATGGAGATTTG 834
Query 849 CAAACGCCAATGCACAAGTGAAGACTCAAACTCATAAAA-CACAAACTGAGACCATGATC 907
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 835 CAAACGCCAATGCACAAGTGAAGACTCAAACTCA-AAAAGCTCAAACTGAGACCATGATC 893
Query 908 CATTCCTTTGGTTCCAAGATATCAGAATTACATGATTCTGTGCAAAGGAAACGCATAGAG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CATTCCTTTGGTTCCAAGATATCAGAATTACATGATTCTGTGCAAAGGAAACGCATAGAG 953
Query 968 CTTCAACGTTTATTGAAAACTAAAGCTCTTCTCGCGATTACAGAATCTCAAACTCCATGT 1027
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 954 TTTCAACGTTTATTGAAAACTAAAGCTCTTCTTGCGATTACAGAATCTCAAACTCCATGT 1013
Query 1028 TTGGAGCAATGGTCTGCTATTGAAGAAGAGTATTCGACTTCGGTGTCACAAACAATCCAA 1087
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1014 TTGGAGCAATGGTGTGCTATTGAAGAAGAGTATTCGACTTCGGTGTGGCAAACAATCCAA 1073
Query 1088 GCTTTTTCCAATGCTTCATTACGGCTTCCACTCGATGGGGATATCATGGTTGATTCTAAA 1147
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 GCTTTGTCCAATGCTTCATTACGGCTTCCACTAGATGGGGATATCATGGTTGATTCTAAG 1133
Query 1148 CAGTTAGGAGATGGACTTGTGGCTGCTTCAAAGATTGTTGACGGCATTACACAAAATGTT 1207
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1134 CAGTTAGGAGATGCACTTGTGGCTGCTTCAAAGATTATTGACGGCATTACACTAAATGTT 1193
Query 1208 GGAAACTATATGCCAAAGGCAAAGGAGATGGAGAGTTTGTTGTCAGAATTAACAAGAGTG 1267
|||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1194 GGAAACTACATGCCAAAGGCAAAGGAGATGGAGAGTTTGGTGACAGAATTAGCAAGAGTG 1253
Query 1268 GCTAGAAGTGAAAGATCATTGACAGAAAATTGC-GTTGTGGCTCTTCTTAAAACGCAAGC 1326
|||| || |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1254 ACTAGTAGAGAAAGATCATTGACAGAAAATTGCAGA-GTGGCTCTTCTTAAAACGCAAGC 1312
Query 1327 TTCACAAATTGAAGAATGTTCTATGAGAAGTCAACTTATCCAGCAAACAACAAAAGAAGA 1386
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1313 TTCACTAATTGAAGAATGTTCTATGAGAGGTCAACTTATCCAGCAAACACCAAAAGAAGA 1372
Query 1387 GTCATCTTCTAAATGAGCACAACTCTTGTTCTACTGAAAGAGATTTA 1433
|||| || |||| ||| |||||||||||||||| ||| |||||||||
Sbjct 1373 GTCACCTACTAAGTGAACACAACTCTTGTTCTAGTGATAGAGATTTA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5